Locus 6214

Sequence ID 2L_DroMel_CAF1
Location 17,303,813 – 17,303,920
Length 107
Max. P 0.815624
window9930

overview

Window 0

Location 17,303,813 – 17,303,920
Length 107
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 97.20
Mean single sequence MFE -16.75
Consensus MFE -16.83
Energy contribution -16.45
Covariance contribution -0.38
Combinations/Pair 1.09
Mean z-score -1.76
Structure conservation index 1.00
SVM decision value 0.66
SVM RNA-class probability 0.815624
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17303813 107 - 22407834
ACACAAUUGCAAAAGUUUUUUAACAUAAGAAAGCAGCAGCAGCGAAAGAAGCUGAGAACAGGCGAAGAUUUCACAAAAUUACAACAAUAAAAGCGAGCAAUAAAAUU
.....(((((....(((((((......))))))).(((((..(....)..)))((((.(.......).))))....................))..)))))...... ( -17.40)
>DroSec_CAF1 1343 107 - 1
ACACAAUUGCAAAAGUUUUUUAACAUAAGAAAGCAGCAGCAGCGAAAGAAGCUGAGAACAGGCGAAGAUUUCACAAAAUUACAACAAUAAAAGCGAGCAAUAAAAUU
.....(((((....(((((((......))))))).(((((..(....)..)))((((.(.......).))))....................))..)))))...... ( -17.40)
>DroSim_CAF1 1650 107 - 1
ACACAAUUGCAAAAGUUUUUUAACAUAAGAAAGCAGCAGCAGCGAAAGAAGCUGAGAACAGGCGAAGAUUUCACAAAAUUACAACAAUAAAAGCGAGCAAUAAAAUU
.....(((((....(((((((......))))))).(((((..(....)..)))((((.(.......).))))....................))..)))))...... ( -17.40)
>DroEre_CAF1 4150 107 - 1
ACACAAUUGCAAAAGUUUUUUAGCAUAAGAAAACAGCAGCAUUGAAAGGAGCUGAGAACAGGCGAAGAUUUCACAAAAUUACAACAAUAAAGGCGAGCAAUAAAAUU
.....(((((....(((((((......))))))).((...((((......(((.......)))...(((((....)))))....))))....))..)))))...... ( -14.80)
>consensus
ACACAAUUGCAAAAGUUUUUUAACAUAAGAAAGCAGCAGCAGCGAAAGAAGCUGAGAACAGGCGAAGAUUUCACAAAAUUACAACAAUAAAAGCGAGCAAUAAAAUU
.....(((((....(((((((......))))))).(((((..(....)..)))((((.(.......).))))....................))..)))))...... (-16.83 = -16.45 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:24 2006