Locus 6213

Sequence ID 2L_DroMel_CAF1
Location 17,303,251 – 17,303,361
Length 110
Max. P 0.525636
window9929

overview

Window 9

Location 17,303,251 – 17,303,361
Length 110
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.20
Mean single sequence MFE -36.43
Consensus MFE -23.01
Energy contribution -24.52
Covariance contribution 1.50
Combinations/Pair 1.24
Mean z-score -1.35
Structure conservation index 0.63
SVM decision value -0.02
SVM RNA-class probability 0.525636
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17303251 110 + 22407834
----GGAGGGGGCGUGGUCGCUGGGGAGGGGCGGCAGAUUGA---GCUUAGAGGGACAAUUGGCGUAAUCAUCGUUAUGUCAUCGUCAUAAUCAGCGAUGCCAUUGUAUAUGCCUCG
----....(((((((((((.((....)).)))((((......---(((......(((...(((((((((....)))))))))..)))......)))..))))......)))))))). ( -36.90)
>DroVir_CAF1 18021 96 + 1
UCACGGUAG-GGCGUGUUCUGC--C---------CAUACCCACCCACAUGCUGAUACAAUUGGCGUAAUCAUCGUUAUGACAUAGUCAUAAUCAGCGCGACUAUUGUA---------
....(((((-((((.....)))--)---------).))))......(.(((((((.......(((.......)))((((((...))))))))))))).).........--------- ( -25.60)
>DroSec_CAF1 785 110 + 1
----GGAGGGGGCGUGGUCGCUGGGGAGGGGCGGCAGAUUGA---GCUUAGAGGGACAAUUGGCGUAAUCAUCGUUAUGCCAUCGUCAUAAUCAGCGCUGCCAUUGUAUAUGCCUCG
----....(((((((((((.((....)).)))(((((.....---(((......(((...(((((((((....)))))))))..)))......))).)))))......)))))))). ( -42.70)
>DroSim_CAF1 1093 109 + 1
----GGAGG-GGCGUGGUCGCUGGGGAGGGGCGGCAGAUUGA---GCUUAGAGGGACAAUUGGCGUAAUCAUCGUUAUGCCAUCGUCAUAAUCAGCGCUGCCAUUGUAUAUGCCUCG
----...((-(((((((((.((....)).)))(((((.....---(((......(((...(((((((((....)))))))))..)))......))).)))))......)))))))). ( -42.90)
>DroEre_CAF1 3607 109 + 1
----GGAGGGGGCGUGGUCGCCGGGGAG-GGCGGCAGAUUGA---GCUUAGAGGGACAAUUGGCGUAAUCAUCGUUAUGCCAUCGUCAUAAUCAGCGAUGCCAUUGUAUAUGCCUCG
----....((((((((...(((......-)))((((......---(((......(((...(((((((((....)))))))))..)))......)))..))))......)))))))). ( -39.90)
>DroAna_CAF1 12508 105 + 1
----GGAGGGGGCGUGGCUGAGAGGA---AGAGGCGAAUACA---GCUUAGAGGGACAAUUGGCGUAAUCAUCGUUAUGCCAUCGUCAUAAUCAGUGCUGCCAUUGU--AUGCCACG
----........(((((((....)..---....((((...((---((...((..(((...(((((((((....)))))))))..)))....))...))))...))))--..)))))) ( -30.60)
>consensus
____GGAGGGGGCGUGGUCGCUGGGGAG_GGCGGCAGAUUGA___GCUUAGAGGGACAAUUGGCGUAAUCAUCGUUAUGCCAUCGUCAUAAUCAGCGCUGCCAUUGUAUAUGCCUCG
.......((.(((((.((((((.......))))))...................(((...(((((((((....)))))))))..))).......))))).))............... (-23.01 = -24.52 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:23 2006