Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,302,076 – 17,302,176 |
Length | 100 |
Max. P | 0.829046 |
Location | 17,302,076 – 17,302,176 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -25.38 |
Consensus MFE | -24.53 |
Energy contribution | -24.79 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.97 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17302076 100 - 22407834 UCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUUUUUCGGGGUCGCUUUGGCUUCCAUUUAACCCAUUCC ..((.......((..(((.....)))..))((((((((((........(((......))).......)))))))((....)).))).......))..... ( -25.76) >DroSec_CAF1 152689 100 - 1 UCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUUUUUCGGGGUCGUUUUGGCUUCCAUUUAACCCAUUCC ..((...((((((..(((.....)))..)))).(((((((........(((......))).......))))))).....))...)).............. ( -25.66) >DroSim_CAF1 146620 100 - 1 UCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUUUUUCGGGGUCGUUUUGGCUUCCAUUUAACCCAUUCC ..((...((((((..(((.....)))..)))).(((((((........(((......))).......))))))).....))...)).............. ( -25.66) >DroYak_CAF1 143315 99 - 1 UCGGCUUCCCCGGGGAUACAAUAUAUUUCCCGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUU-UUCGGGGUCGUUUUGGCUUCCAGUUAACCCAUUCC ..((...((.((((((..........)))))).(((((((........(((......)))....-..))))))).....))...)).............. ( -24.44) >consensus UCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUUUUUCGGGGUCGUUUUGGCUUCCAUUUAACCCAUUCC ..((...((((((..(((.....)))..)))).(((((((........(((......))).......))))))).....))...)).............. (-24.53 = -24.79 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:20 2006