Locus 621

Sequence ID 2L_DroMel_CAF1
Location 1,833,817 – 1,833,914
Length 97
Max. P 0.506254
window1016

overview

Window 6

Location 1,833,817 – 1,833,914
Length 97
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 71.98
Mean single sequence MFE -25.82
Consensus MFE -9.38
Energy contribution -9.47
Covariance contribution 0.08
Combinations/Pair 1.20
Mean z-score -1.87
Structure conservation index 0.36
SVM decision value -0.05
SVM RNA-class probability 0.506254
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1833817 97 - 22407834
----GCUGGCAGACAAAGUUAAUACGACACAGCUGCCCUCGCGGUUGGUGGG-CAAUUGAAAAGUUUAUUAAUAAC-CCGCAGAACGGCAGUGGCAGCCAUAC
----..((((.......(((.....))).....((((((.((.(((.(((((-..(((((........)))))..)-))))..))).)))).))))))))... ( -29.40)
>DroGri_CAF1 14148 82 - 1
-------CCGAGCAAAAGUUAAUGUGA-ACAGCUGUCC-CGCUGUUCGCUGCAAAAUUGAAAAGUUUAUUAAUAAC-AAAAAU----GAGCCGACG-------
-------.((.((....((....((((-(((((.....-.))))))))).)).(((((....))))).........-......----..))))...------- ( -20.40)
>DroSim_CAF1 2085 97 - 1
----GUUGGCAGACAAAGUUAAUACGACACAGCUGCCCUCGCGGUUGGUGGG-CAAUUGAAAAGUUUAUUAAUAAC-CCGCAGAACGGCAGUGGCAGCCAUAC
----((((((.......))))))........((((((((.((.(((.(((((-..(((((........)))))..)-))))..))).)))).))))))..... ( -31.20)
>DroYak_CAF1 2138 97 - 1
----GCUGGCAGACAAAGUUAAUACGACACAGCUGCCCUCGCGGUUGGUGGG-CAAUUGAAAAGUUUAUUAAUAAC-CCGCAGAACGGCAGUGGCAGCCAUAC
----..((((.......(((.....))).....((((((.((.(((.(((((-..(((((........)))))..)-))))..))).)))).))))))))... ( -29.40)
>DroMoj_CAF1 14930 89 - 1
GUAGACGAAAAGAAAAAGUUAAUGCGA-GCAGCUGUCA-CGCUGUUUGCUGG-CAAUUGAAAAGUUUAUUAAUAACCAAAAUC----GUGCUGGCA-------
.(((((((...............((((-(((((.....-.)))))))))(((-..(((((........)))))..)))...))----)).)))...------- ( -22.10)
>DroAna_CAF1 1995 90 - 1
-------GACAGACAAAGUUAAUACGACACAGCUGCCC-CGCAGUUGGUGGG-CAAUUGAAAAGUUUAUUAAUAAC-CACCA---AGGCAGCAAAAGCUAUGG
-------..........(((.....)))...((((((.-.....(((((((.-..(((((........)))))..)-)))))---)))))))........... ( -22.40)
>consensus
____GCUGGCAGACAAAGUUAAUACGACACAGCUGCCC_CGCGGUUGGUGGG_CAAUUGAAAAGUUUAUUAAUAAC_CAGCAG__CGGCAGUGGCAGCCAUAC
.................(((((((...(((((((((....)))))).)))....((((....))))))))))).............................. ( -9.38 =  -9.47 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:11 2006