| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,300,641 – 17,300,743 |
| Length | 102 |
| Max. P | 0.656202 |
| Location | 17,300,641 – 17,300,743 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 87.19 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -19.86 |
| Energy contribution | -19.99 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17300641 102 + 22407834 AAGGUGGAAACUGAUACAUGUCGCUUGUUCUGCGUUUAUGGGCCAAAGGCAAAAGUGCGUGAGUG------------GAUGUGAGUAUGUACAGGGGUCACUAUAGUAUAAGGA ..(((((...(((.(((((((((((..(((.((((......(((...)))......)))))))..------------)..)))).)))))))))...)))))............ ( -28.70) >DroSec_CAF1 151253 102 + 1 AAGGUGGAAGCUGAUACAUGUCGCUUGUUCUGCGUUUAUGGGCCAAAGGCAAAAGUGCGUGAGUG------------GUUGUGACUAUGUACAGGGGUCACUAAAGUAUAAGGA ..(((((...(((.(((((((((((..(((.((((......(((...)))......)))))))..------------)..))))).))))))))...)))))............ ( -29.50) >DroSim_CAF1 145165 102 + 1 AAGGUGGAAGCUGAUACAUGUCGCUUGUUCUGCGUUUAUGGGCCAAAGGCAAAAGUGCGUGAGUG------------GUUGUGAGUAUGUACAGGGGUCACUAAAGUAUAAGGA ..(((((...(((.(((((((((((..(((.((((......(((...)))......)))))))..------------)..)))).)))))))))...)))))............ ( -27.60) >DroYak_CAF1 141856 113 + 1 AAGGUGGAAGCUGAUACAUGGCGCUUGUUCUGCGUUUAUGGGCCAAAAGCGGAAGUGCGUGAGUGUGUUCACACACAGGUAUGUGUAUGAACAGGGGUCACUAAAGAGUAAA-A ..(((((...(((((((((.((((...((((((...............))))))..))))..))))))(((.(((((....))))).))).)))...)))))..........-. ( -32.66) >consensus AAGGUGGAAGCUGAUACAUGUCGCUUGUUCUGCGUUUAUGGGCCAAAGGCAAAAGUGCGUGAGUG____________GUUGUGAGUAUGUACAGGGGUCACUAAAGUAUAAGGA ..(((((...(((.((((((((((.(..((.((((......((.....))......))))))..)...............)))).)))))))))...)))))............ (-19.86 = -19.99 + 0.13)
| Location | 17,300,641 – 17,300,743 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 87.19 |
| Mean single sequence MFE | -17.93 |
| Consensus MFE | -11.54 |
| Energy contribution | -11.60 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17300641 102 - 22407834 UCCUUAUACUAUAGUGACCCCUGUACAUACUCACAUC------------CACUCACGCACUUUUGCCUUUGGCCCAUAAACGCAGAACAAGCGACAUGUAUCAGUUUCCACCUU ..((.((((....((((.............))))...------------......(((..((((((.((((.....)))).))))))...)))....)))).)).......... ( -14.22) >DroSec_CAF1 151253 102 - 1 UCCUUAUACUUUAGUGACCCCUGUACAUAGUCACAAC------------CACUCACGCACUUUUGCCUUUGGCCCAUAAACGCAGAACAAGCGACAUGUAUCAGCUUCCACCUU ..((.((((....(((((...........)))))...------------......(((..((((((.((((.....)))).))))))...)))....)))).)).......... ( -17.20) >DroSim_CAF1 145165 102 - 1 UCCUUAUACUUUAGUGACCCCUGUACAUACUCACAAC------------CACUCACGCACUUUUGCCUUUGGCCCAUAAACGCAGAACAAGCGACAUGUAUCAGCUUCCACCUU ..((.((((....((((.............))))...------------......(((..((((((.((((.....)))).))))))...)))....)))).)).......... ( -14.02) >DroYak_CAF1 141856 113 - 1 U-UUUACUCUUUAGUGACCCCUGUUCAUACACAUACCUGUGUGUGAACACACUCACGCACUUCCGCUUUUGGCCCAUAAACGCAGAACAAGCGCCAUGUAUCAGCUUCCACCUU .-...........((((....((((((((((((....))))))))))))...))))((......))..((((..(((...(((.......)))..)))..)))).......... ( -26.30) >consensus UCCUUAUACUUUAGUGACCCCUGUACAUACUCACAAC____________CACUCACGCACUUUUGCCUUUGGCCCAUAAACGCAGAACAAGCGACAUGUAUCAGCUUCCACCUU .............(((....((((((((....................................(((...))).......(((.......)))..))))).)))....)))... (-11.54 = -11.60 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:18 2006