Locus 6206

Sequence ID 2L_DroMel_CAF1
Location 17,294,678 – 17,294,781
Length 103
Max. P 0.537444
window9917

overview

Window 7

Location 17,294,678 – 17,294,781
Length 103
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 96.41
Mean single sequence MFE -32.22
Consensus MFE -27.00
Energy contribution -27.32
Covariance contribution 0.32
Combinations/Pair 1.09
Mean z-score -1.41
Structure conservation index 0.84
SVM decision value 0.01
SVM RNA-class probability 0.537444
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17294678 103 + 22407834
CAAAGACGGGGGAAAUGGUUGGUUAACUGACGAACUAUCUCCGGCCAGAUUUGCAGUCAGAAUCCUUGC---AGAUGCCUGCACUUCAACGGCUUUUUGGUAGUCA
....(((.(((((..(((((.(((....))).)))))))))).((((((...((.((..(((....(((---((....))))).))).)).))..)))))).))). ( -31.90)
>DroSec_CAF1 145309 106 + 1
CAAAGACGGCGGAAAUGGUUGGUUAACUGACGAACUAUCUCCGGCCAGAUUUGCAGUCAGAAUCCUUGCAGCAGAUGCCUGCACUUCAACGGCUUUUUGGUAGUCA
....(((..((((.((((((.(((....))).)))))).))))((((((...((.((.((....)).)).((((....)))).........))..)))))).))). ( -33.80)
>DroSim_CAF1 138746 106 + 1
CAAAGACGGGGGAAAUGGUUGGUUAACUGACGAACUAUCUCCGGCCAGAUUUGCAGUCAGAAUCCUUGCAGCAGAUGCCUGCACUUCAACGGCUUUUUGGUAGUCA
....(((.(((((..(((((.(((....))).)))))))))).((((((...((.((.((....)).)).((((....)))).........))..)))))).))). ( -32.00)
>DroEre_CAF1 132956 105 + 1
CAAAAACGG-GGAAAUGGUUGGUUAACUGACGAACUAUCUCCGGCCAGAUUUGCAGUCAGAAUCCUUGCAGCAGAUGCCUGCACUUCAACGGCUUUCUGGUAGUCA
......(((-(((..(((((.(((....))).)))))))))))((((((...((.((.((....)).)).((((....)))).........))..))))))..... ( -33.30)
>DroYak_CAF1 135960 105 + 1
CAAAAACGG-GGAAAUGGUUGGUUAACUGACGAACUAUCUCCGGCCAGAUUUGCAGUCAGAAUCCUUGUAGCAGAUGCCUGCACUUUAACGGCUUUUUGGUAGUCA
(((((((((-(((..(((((.(((....))).)))))))))))(((.(((((.......)))))......((((....))))........)))))))))....... ( -30.10)
>consensus
CAAAGACGG_GGAAAUGGUUGGUUAACUGACGAACUAUCUCCGGCCAGAUUUGCAGUCAGAAUCCUUGCAGCAGAUGCCUGCACUUCAACGGCUUUUUGGUAGUCA
....(((...(((.((((((.(((....))).)))))).))).((((((...((.((..(((....(((((.......))))).))).)).))..)))))).))). (-27.00 = -27.32 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:12 2006