Locus 6204

Sequence ID 2L_DroMel_CAF1
Location 17,293,168 – 17,293,268
Length 100
Max. P 0.772236
window9915

overview

Window 5

Location 17,293,168 – 17,293,268
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 95.20
Mean single sequence MFE -31.86
Consensus MFE -27.58
Energy contribution -27.34
Covariance contribution -0.24
Combinations/Pair 1.14
Mean z-score -1.41
Structure conservation index 0.87
SVM decision value 0.53
SVM RNA-class probability 0.772236
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17293168 100 - 22407834
AAAAGGGGGUUUUCCAAAAGGGAAGAAGUGCAGCGUCAACAAAUUGGCCGCAUUUCCUUUAGCAGAAAGUUUGCCUGGACCUUGGCGGAUGGCAAUGACU
.(((((..(((((((.....))))))......(((((((....)))).))).)..))))).((.....(((((((........))))))).))....... ( -27.70)
>DroSec_CAF1 143740 100 - 1
AAAAGGGGGUUUCCCAAAAGGGAAGAAGUGCAGCGUCAACAAAUUGGCCUCAUUUCCUUUAGCAGAAAGUUUGCCUGGACCUUGACGGAUGGCGAUGACU
.(((((...((((((....))))))(((((.((.(((((....)))))))))))))))))..........(((((....((.....))..)))))..... ( -24.60)
>DroSim_CAF1 136728 100 - 1
AAAAGGGGGUUUCCCAAAAGGGAAGAAGUGCAGCGUCAACAAAUUGGCCGCAUUUCCUUUAGCAGAAAGUUUGCCUGGACCUUGGCGGAUGGCGAUGACU
.(((((..(((((((....)))))........(((((((....)))).)))))..))))).((.....(((((((........))))))).))....... ( -30.10)
>DroEre_CAF1 131365 100 - 1
AAAAGGGGGUUUCCCGAAAGGGAAGAAGUGCGGCGUCAACAAAUUGGCCGCAUUUCCUUUCGCAGAAAGUUCGCCUGGACCUCGGCGGAUGGCGAUGACU
....(..((.(((((....)))))((((((((((............))))))))))))..)((.....(((((((........))))))).))....... ( -41.60)
>DroYak_CAF1 134181 100 - 1
AAGAGGGGGUUUCCUAAAAGGGAAGAAGUGCGGCGUCAACAAAUUGGCCGCAUUUCCUUUCGCAGAAAGUUUGCCUGGACCUUGGCGGAUGGCGAUGACU
..((((((.((((((....))))))(((((((((............)))))))))))))))((.....(((((((........))))))).))....... ( -35.30)
>consensus
AAAAGGGGGUUUCCCAAAAGGGAAGAAGUGCAGCGUCAACAAAUUGGCCGCAUUUCCUUUAGCAGAAAGUUUGCCUGGACCUUGGCGGAUGGCGAUGACU
.(((((..(((((((....)))))........(((((((....)))).)))))..))))).((.....(((((((........))))))).))....... (-27.58 = -27.34 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:10 2006