Locus 6203

Sequence ID 2L_DroMel_CAF1
Location 17,291,937 – 17,292,053
Length 116
Max. P 0.505119
window9914

overview

Window 4

Location 17,291,937 – 17,292,053
Length 116
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 85.99
Mean single sequence MFE -22.55
Consensus MFE -15.84
Energy contribution -17.92
Covariance contribution 2.08
Combinations/Pair 1.09
Mean z-score -1.61
Structure conservation index 0.70
SVM decision value -0.06
SVM RNA-class probability 0.505119
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17291937 116 - 22407834
---AAAGAUAACGUCAAUUAAACUUUUUUUGGCUGCAGCUAAUUAAUAUACUUUUUUCAAUAUAGUUCAUUGAUCAUUAGCUCAUCAAAUGCUGUUGGUUCCCAUGACGUUGUUUACAC
---..(((((((((((....(((....(((((.((.(((((((((((..(((...........)))..))))))...))))))))))))....)))((...)).))))))))))).... ( -24.70)
>DroSec_CAF1 142017 114 - 1
---AAAGAUAACGUCAAUUAAACUUUUUUUGGAUGCAGCUAAUUAAUUUACUUUUUGCCU--UAGUUCAUUGAUCAUUAGCUCAUCAAAUGCUGUUGGUUCCCAUGACGUUGUUUACAC
---..(((((((((((....((((.......((((.(((((((((((..(((........--.)))..))))))...)))))))))..........))))....))))))))))).... ( -26.13)
>DroSim_CAF1 135197 116 - 1
---AAAGAUAACGUCAAUUAAACUUUUUUUGGCUGCAGCUAAUUAAUUUACUUUUUGCCAUAUAGUUCAUUGAUCAUUAGCUCAUCAAAUGCUGUUGGUUCCCAUGACGUUGUUUACAC
---..(((((((((((........((..(((((....)))))..))..........((((.(((((...(((((.........)))))..))))))))).....))))))))))).... ( -25.90)
>DroEre_CAF1 130221 97 - 1
---------------------AA-UUUUUUGCCUGAAGCCAAUUAAUUUACUUAUUGCUAUAUAGUUCAUUGAUCAUUAGCUCGUCAAAUGCUGUUGGUUCCCGUGAUGUUGUUUACAC
---------------------..-............(((((((..((((((.....((((.................))))..)).))))...)))))))...((((......)))).. ( -11.43)
>DroYak_CAF1 132981 118 - 1
UUUAAAGAUAACGUCAAUUAAAC-UUUUUUGGCUGAAGCUAAUUAAUUUACUUUUUGCAAUAUAGUUCAUUGAUCAUUAGCUCAUCAAAUGCGGUUGGUUCCCGUGAUGUUGUUUACAC
.....((((((((((........-...(((((.(((.((((((((((..(((...........)))..))))))...)))))))))))).((((.......)))))))))))))).... ( -24.60)
>consensus
___AAAGAUAACGUCAAUUAAACUUUUUUUGGCUGCAGCUAAUUAAUUUACUUUUUGCAAUAUAGUUCAUUGAUCAUUAGCUCAUCAAAUGCUGUUGGUUCCCAUGACGUUGUUUACAC
.....(((((((((((...........(((((.((.(((((((((((..(((...........)))..))))))...))))))))))))......(((...)))))))))))))).... (-15.84 = -17.92 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:08 2006