Locus 6202

Sequence ID 2L_DroMel_CAF1
Location 17,291,343 – 17,291,436
Length 93
Max. P 0.806189
window9913

overview

Window 3

Location 17,291,343 – 17,291,436
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 91.42
Mean single sequence MFE -22.92
Consensus MFE -20.36
Energy contribution -20.18
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -1.64
Structure conservation index 0.89
SVM decision value 0.63
SVM RNA-class probability 0.806189
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17291343 93 - 22407834
UAACUGUUUGCCAAGCUGUCAAGCUCUAGCUAACUGCCAGCACACACAUACACACACACACUUGCAGGCAGGCAAACACAACGGUAUUGCAGG
...((((.((((.(((((........)))))..(((((.(((....................))).)))))...........))))..)))). ( -23.85)
>DroSec_CAF1 141426 85 - 1
UAACUGUUUGCCAAGCUGUCAAGCUCUAGCUAACUGCCAGCACACAC--------ACACACUCGCAGGCUGGCAAACACAACGGGAUUGCAGG
...((((...((.(((((........)))))...(((((((......--------............))))))).........))...)))). ( -22.87)
>DroSim_CAF1 134598 91 - 1
UAACUGUUUGCCAAGCUGUCAAGCUCUAGCUAACUGCCAGCACACACA--CACACACACACUCGCAGGCUGGCAAAUACAACGGGAUUGCAGG
...((((...((.(((((........)))))...(((((((.......--.................))))))).........))...)))). ( -22.56)
>DroYak_CAF1 132437 87 - 1
UAACUGUUUGCCAAGCUGUCAAGCUCUAGCUAACUGCCAGCUCACACA------CACACACUCGCAGGCAGGCAAACACAACCGGAUUGCAGG
....((((((((.(((((........)))))...((((.((.......------.........)).))))))))))))...((........)) ( -22.39)
>consensus
UAACUGUUUGCCAAGCUGUCAAGCUCUAGCUAACUGCCAGCACACACA______CACACACUCGCAGGCAGGCAAACACAACGGGAUUGCAGG
....((((((((.(((((........)))))....(((.((......................)).))).))))))))............... (-20.36 = -20.18 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:07 2006