Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,287,707 – 17,287,827 |
Length | 120 |
Max. P | 0.935066 |
Location | 17,287,707 – 17,287,827 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -36.77 |
Consensus MFE | -24.81 |
Energy contribution | -24.73 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.45 |
Mean z-score | -3.17 |
Structure conservation index | 0.67 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17287707 120 + 22407834 CAUUCUACGCACUUUUUCCUCUACAGACUCGGGAAAGUCCUCAUCCGCCGAGGAUUCUUCUGAGUCUCCUUCGAUGCCAAAUGCCGGCAUUUCUGACUUUGAUGUGUGUCUCAACUUUUC ......((((((............((((((((((.(((((((.......))))))).)))))))))).....((((((.......))))))............))))))........... ( -37.00) >DroGri_CAF1 270688 120 + 1 CUUGCGACGCACUUUCUCAUCAAUGGACUCUGGGAAAUCUUCGUCGUCCGAGGAAUCAUCCGAAUCGACAUCCAUGCCAAACGAUGGAGUCUCCGAUUCGGCGGCCAUGCGUAGUUUUUC ...((.(((((.(((((((((....))...))))))).....((((((...(((....)))((((((((.(((((........))))))))...)))))))))))..))))).))..... ( -33.90) >DroSec_CAF1 137819 120 + 1 CAUUCUUCGCACUUUUUCCUCUACAGACUCGGGAAAGUCCUCGUCCGCCGAGGACUCAUCUGAGUCUCCUUCAAUGCCAAAUGCCGGCAUUUCUGACUUUGAAGUGUGUCUCAACUUUUC .......((((((((....((...(((((((((..((((((((.....))))))))..))))))))).....((((((.......))))))...))....))))))))............ ( -41.60) >DroSim_CAF1 130966 120 + 1 CAUUCUACGCACUUUUUCCUCUACAGACUCGGGAAAGUCCUCGUCCGCCGAGGAUUCAUCUGAGUCUCCUUCGAUGCCAAAUGCCGGCAUUUCUGACUUUGAAGUGUGUCUCAACUUUUC ......(((((((((....((...(((((((((..((((((((.....))))))))..))))))))).....((((((.......))))))...))....)))))))))........... ( -41.00) >DroEre_CAF1 126066 120 + 1 CAUUCUCCGCACUUUUUCCUCCACGGACUCGGGAUAGUCAUCGUCCGCCGAGGAUUCAUCCGACUCUCCUUCGAUGCCAAAAGCCGGCAUUUCCGACAUUGACUUCUGUCGCAGCUUCUC ........((.............((((...((((.((((.(((.....)))(((....))))))).))))..((((((.......)))))))))).....(((....)))))........ ( -30.70) >DroYak_CAF1 128871 120 + 1 CAUCCUUCGCACUUUUUCCUCCACAGAUUCGGGAUAGUCUUCGUCCGCCGAGGAUUCCUCCGAGUCUCCGUCGAUGCCAAAUGCCGGCAUUUCUGACUUUGAAGUCAGUCGCAGCUUUUC ........((..............(((((((((..((((((((.....))))))))..))))))))).....((((((.......)))))).((((((....))))))..))........ ( -36.40) >consensus CAUUCUACGCACUUUUUCCUCUACAGACUCGGGAAAGUCCUCGUCCGCCGAGGAUUCAUCCGAGUCUCCUUCGAUGCCAAAUGCCGGCAUUUCUGACUUUGAAGUCUGUCGCAACUUUUC .......................((((((((((..((((((((.....))))))))..))))))))......((((((.......))))))..)).....(((((........))))).. (-24.81 = -24.73 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:57 2006