Locus 6198

Sequence ID 2L_DroMel_CAF1
Location 17,287,414 – 17,287,532
Length 118
Max. P 0.832676
window9901

overview

Window 1

Location 17,287,414 – 17,287,532
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.83
Mean single sequence MFE -25.44
Consensus MFE -12.31
Energy contribution -13.20
Covariance contribution 0.89
Combinations/Pair 1.21
Mean z-score -2.26
Structure conservation index 0.48
SVM decision value 0.72
SVM RNA-class probability 0.832676
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17287414 118 - 22407834
CAAGCAACUUGACGCAAACAAAAUACUCAUAUUCUGAAAGUCAAUCCGAAUACA--GGAUAUCAGAUCAUUCUGAGCCUGAACCAGGUUUCUCCCCCAGCCAUCACUGCUACCAAAAACU
..((((..(((((.....((.((((....)))).))...)))))...((...((--((...(((((....))))).)))).....((((........)))).))..)))).......... ( -23.30)
>DroSec_CAF1 137529 115 - 1
CAAGCAACUUGACA---ACCAAAUACUCAUAUUCUGAAAGUCAAUCCGAAUACA--GGUUAUCAGAUCAUUCUGAGCCUGAACCAGGUUUCUCCCCCAGCCAUCACUGCUACCAAAAACU
..((((..(((((.---..((((((....)))).))...)))))...((...((--(((..(((((....)))))))))).....((((........)))).))..)))).......... ( -22.20)
>DroSim_CAF1 130673 118 - 1
CAAGCAACUUGACACAAAGCAAAUACUCAUAUUCUGAAAGUCAAUCCGAAUACA--GGUUAUCAGAUCAUUCUGAGCCUGAACCAGGUUUCUCCCCCAGCCAUCACUGCUACCAAAAACU
..((((..(((((....((..((((....))))))....)))))...((...((--(((..(((((....)))))))))).....((((........)))).))..)))).......... ( -21.90)
>DroEre_CAF1 125773 118 - 1
CCAGCAACUUGACACAAAACAAAUCCUCAUAUACUGACAGUCAAUCCGAUUAUC--AGUUGUCAGAUCAUUCUGAGCCCGAACCAGGUUUCUCCCCCAGCCAUCAUUGCUACCAAAAACU
..(((((..(((..............((....(((((.((((.....)))).))--)))..(((((....)))))....))....((((........)))).)))))))).......... ( -20.60)
>DroYak_CAF1 128575 118 - 1
GGAGCAACUUGACAAAAACCAAAUCCUCAUAUUCUGUCAGUCAAUCCGAUGAAA--GGUUAUCAGAUCAUUCUGAGCCCGAGCCAGGUUUCUCCCCCAACCAUCAUUGCUACCAAAAACU
(((((((.((((((....................)))))).......((((...--((((.(((((....))))).....)))).((........))...)))).))))).))....... ( -25.25)
>DroPer_CAF1 198575 103 - 1
CUCGCACUUC------------GCACUCGUUGGCCGACGCCGGAUCCGAGGACGGCGGGUAUUACAUC-----GAGCCCGAGCCGGGCUUUGAUCCCAGCCAUCCGUGCUACCAGAAGUU
.....(((((------------((((((((((((....)))))...)))(((.((((((.((((....-----(((((((...)))))))))))))).))).))))))).....))))). ( -39.40)
>consensus
CAAGCAACUUGACACAAACCAAAUACUCAUAUUCUGAAAGUCAAUCCGAAUACA__GGUUAUCAGAUCAUUCUGAGCCCGAACCAGGUUUCUCCCCCAGCCAUCACUGCUACCAAAAACU
..((((..(((((..........................)))))...((.......((((.(((((....))))).....)))).((((........)))).))..)))).......... (-12.31 = -13.20 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:56 2006