Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,282,422 – 17,282,521 |
Length | 99 |
Max. P | 0.525947 |
Location | 17,282,422 – 17,282,521 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 77.24 |
Mean single sequence MFE | -19.04 |
Consensus MFE | -11.24 |
Energy contribution | -11.68 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.64 |
Structure conservation index | 0.59 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.525947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17282422 99 + 22407834 AUAAACUUGAAAAUACUCAAUGCGGGAAGUAUCCCACUUGUGUAAUGCACAACCAUUACUCCUCUACUUCAGGUUCGUAUUUUA--------------UCCCCA-----UUCAAGAAC .....((((((.......(((((((((....))))(((((.((((((......))))))..........)))))..)))))...--------------......-----))))))... ( -18.79) >DroSec_CAF1 121613 92 + 1 AUAAACUUGAAAACACUCAAUGCGGGAAGUAUCCCACUUGUGUAAUGCAAAACUAUUACUCCUCUAUUUCAGGUUCGUAUUUUA--------------ACCCCA-----U-------C (..(((((((((.....(((.(.((((....)))).)))).((((((......)))))).......)))))))))..)......--------------......-----.-------. ( -17.00) >DroSim_CAF1 125390 99 + 1 AUAAACUUGAAAACACUCAAUGCGGGAAGUAUCCGACAUGUGUAAUGCAAAACCAUUACUCCUCUACUUCAGGUUCGUAUUUUA--------------ACCCCA-----UUCAAGAAC .....((((((.......(((((((((((((...((...(.((((((......)))))).).))))))))....)))))))...--------------......-----))))))... ( -17.29) >DroEre_CAF1 120688 118 + 1 GUCAACUUGAAAACGCUCAAUGCGGGAAGUAUCCAACUUGUGUAAUGCAGAAGCAAUACUCCUUUACUUCAGGUUCGUUUACUAUCUGCAACAAAAUAAUUCAACCGAGUACAACAAU ......((((......))))((((((.((((..(((((((.((((.(.((.(....).)).).))))..)))))).)..)))).))))))........((((....))))........ ( -21.90) >DroYak_CAF1 123006 103 + 1 AUCAACUUGAAAACGCUCAAUGCGGGAAGUAUCCGACUUGUGUAAAGAAGGAGCAAUACUCCUCUACUUCAGGUUCGUUUAUUA--------------AUUCUACCAAAUACAACAA- ......(((....(((.....)))(((((((..(((((((.((..(((.((((.....)))))))))..)))).)))..)))..--------------.))))..))).........- ( -20.20) >consensus AUAAACUUGAAAACACUCAAUGCGGGAAGUAUCCCACUUGUGUAAUGCAAAACCAUUACUCCUCUACUUCAGGUUCGUAUUUUA______________ACCCCA_____UACAACAAC ...((((((((.............(((....))).......((((((......))))))........))))))))........................................... (-11.24 = -11.68 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:53 2006