Locus 6195

Sequence ID 2L_DroMel_CAF1
Location 17,280,188 – 17,280,282
Length 94
Max. P 0.916063
window9897

overview

Window 7

Location 17,280,188 – 17,280,282
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 78.28
Mean single sequence MFE -31.40
Consensus MFE -21.06
Energy contribution -22.03
Covariance contribution 0.97
Combinations/Pair 1.11
Mean z-score -1.89
Structure conservation index 0.67
SVM decision value 1.11
SVM RNA-class probability 0.916063
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17280188 94 - 22407834
GCUCGACCACACCCCCUUUUGCCAGCAAACCGGGCGGACUCAUCCUUUCUGUCCGCCGGAGACUUAACAGCUCGACAGCUGUCCGUCUGCGAGU
(((((.((.........((((....))))...(((((((...........)))))))))((((...((((((....))))))..)))).))))) ( -33.60)
>DroSec_CAF1 118289 94 - 1
GCUCGACCACACCCCCUUUUGCCCGCAAGCCGGGCGGACUCAUCCUUUCUGUCCGCCGGAGACUUAACAGCUCGACAGCUGUCCGUCUGCGAGU
(((((.((.........((((....))))...(((((((...........)))))))))((((...((((((....))))))..)))).))))) ( -33.30)
>DroEre_CAF1 117946 93 - 1
GC-CGACCACACCCCCUUUUGCCCACAAGCCGGGCGGACUCAUCCUUUCUGUCCGCCGGAGACUUAACAGCUCGACAGCUGUCCGUCUGCGAGU
..-..............(((((.......((((.(((((...........)))))))))((((...((((((....))))))..))))))))). ( -29.50)
>DroYak_CAF1 120576 94 - 1
GCUCGACCACACCCCCUUUUGCCCAUAAGCCCGGCGGACUCAUCCUUUCUGUCCGCCGGAGACUUAACAGCUCGACAGCUGUCCGUCUGCGAGU
(((((.........................(((((((((...........)))))))))((((...((((((....))))))..)))).))))) ( -35.80)
>DroAna_CAF1 186363 80 - 1
GUCCGACCACAACACGUAU----------ACGGCCGGACUCAUCCUCUCUGUCCGGCGGAGACUUAACAGCUCGACA----UCAGUCUGCGAAA
(((...((......((...----------.))(((((((...........))))))))).)))......((..(((.----...))).)).... ( -22.50)
>DroPer_CAF1 191129 86 - 1
G----UGUACGGA----UCCGGCUGCGGGUCCGGGGUCCUCAUCCUGCCUGUCCGGCGGAGACUUAACAGCUCUGCAGCUGUCCGUCUGUUAGA
.----...(((((----..(((((((((((...(((((....(((.(((.....)))))))))))....)).))))))))))))))........ ( -33.70)
>consensus
GCUCGACCACACCCCCUUUUGCCCGCAAGCCGGGCGGACUCAUCCUUUCUGUCCGCCGGAGACUUAACAGCUCGACAGCUGUCCGUCUGCGAGU
................................(((((((...........)))))))(.((((...((((((....))))))..)))).).... (-21.06 = -22.03 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:52 2006