Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,267,704 – 17,267,796 |
Length | 92 |
Max. P | 0.706140 |
Location | 17,267,704 – 17,267,796 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 84.13 |
Mean single sequence MFE | -23.88 |
Consensus MFE | -19.92 |
Energy contribution | -21.00 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.74 |
Structure conservation index | 0.83 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17267704 92 - 22407834 ---------GCCAUUAGCGGGGCCUAAUUAGGCGCGGUC-----UGGCAGCACCCGCAAA-AAA------------UUAUAGAAACAUAUAGCAAACCGCACGAAAAUUGUGCAAUUCA ---------((.....(((((((((....))))((....-----..))....)))))...-...------------.((((......)))))).....((((((...))))))...... ( -26.10) >DroPse_CAF1 186150 113 - 1 CAGCCCCUCGCCAUUAACGGGGCCUAAUUAGGCGCGGUC-----UGGCAGCACCCGCGAA-GAAAAAAAGAAAACCAUAUAGAAAUAUUAAGCAAAUCGCAUGAAAAUUUUGCAAAUCA .........((((...((.(.((((....)))).).)).-----)))).......(((((-(................(((....)))...((.....)).......))))))...... ( -22.20) >DroSim_CAF1 115418 92 - 1 ---------GCCAUUAGCGGGGCCUAAUUAGGCGCGGUC-----UGGCAGCACCCGCAAA-AAA------------UUAUAGAAACAUAUAGCAAACCGCACGAAAAUUGUGCAAUUCA ---------((.....(((((((((....))))((....-----..))....)))))...-...------------.((((......)))))).....((((((...))))))...... ( -26.10) >DroEre_CAF1 109811 92 - 1 ---------GCCAUUAGCGG-GCCUAAUUAGGCGCGGUC-----UGGCAGAACCCGCAAAAAAA------------UUAUAGAAACAUAUAGCAAGCCGCACGAAAAUUGUGCAAUUCA ---------((((..(.((.-((((....)))).)).).-----)))).(((............------------(((((......)))))......((((((...))))))..))). ( -23.00) >DroYak_CAF1 112658 92 - 1 ---------GCCAUUAGCGGGGCCUAAUUAGGCGCGGUC-----UGGCAGCACCCGCAAA-AAA------------UUAUAGAAACAUAUAGCAAACCGCACGAAAAUUGUGCAAUUCA ---------((.....(((((((((....))))((....-----..))....)))))...-...------------.((((......)))))).....((((((...))))))...... ( -26.10) >DroAna_CAF1 179229 98 - 1 ---------GCCAUUAGCGCGGCCUAAUUAGACGCGGUCUGGUCUGGUAGCACCCGCAAAAAAA------------UUAUAGAAAAAUAUAGCAAAUAGCAUGAAAAUUGUGCAAAUCA ---------.......((((((.(((.((((((........)))))))))...)))).......------------.((((......)))))).....(((..(...)..)))...... ( -19.80) >consensus _________GCCAUUAGCGGGGCCUAAUUAGGCGCGGUC_____UGGCAGCACCCGCAAA_AAA____________UUAUAGAAACAUAUAGCAAACCGCACGAAAAUUGUGCAAUUCA .........((.....(((((((((....))))((.(((......))).)).)))))....................((((......)))))).....((((((...))))))...... (-19.92 = -21.00 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:50 2006