Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,264,967 – 17,265,078 |
Length | 111 |
Max. P | 0.786108 |
Location | 17,264,967 – 17,265,078 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 59.23 |
Mean single sequence MFE | -22.90 |
Consensus MFE | -10.72 |
Energy contribution | -11.17 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.25 |
Mean z-score | -1.63 |
Structure conservation index | 0.47 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17264967 111 - 22407834 UUUCUUAAA-------UGGAAGCAAUUAUUCUAGCAAAUAAGCUGUCAAUCGACAGUAAUUAUAUUAAAAUGGAAAUAAAAUGGAAAUAUAUUUUGCAAUGCUAAAACAAACACAUCA (((((....-------.))))).........(((((.....((((((....))))))...................(((((((......)))))))...))))).............. ( -15.80) >DroPse_CAF1 181373 100 - 1 UUUUUCCGCUAGAAGCUUAGGGCAAUUGUUCAUUCGGAUGAGCUGUCAAACGGCUGUCGAUUGAGCAAAAU-----------UUAUU--CAUAUUUCAGUGUGAAACAAAGUU----- ..((((((((.(((((.....))..(((((((.((((...(((((.....))))).)))).)))))))...-----------.....--.....))))))).)))).......----- ( -27.50) >DroPer_CAF1 177231 98 - 1 U--UUCCGGUAGAAGCUUAGGGCAAUUGUUCAUUCGGAUGAGCUGUCAAACGGCUGUCGAUUGAGCAAAAU-----------UUAUU--CAUAUUUCAGUGUGAAACAAAGUU----- .--..........(((((.(.....(((((((.((((...(((((.....))))).)))).)))))))...-----------...((--(((((....))))))).).)))))----- ( -25.40) >consensus UUUUUCCGAUAGAAGCUUAGGGCAAUUGUUCAUUCGGAUGAGCUGUCAAACGGCUGUCGAUUGAGCAAAAU___________UUAUU__CAUAUUUCAGUGUGAAACAAAGUU_____ .........................(((((((.((((...(((((.....))))).)))).))))))).................................................. (-10.72 = -11.17 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:49 2006