Locus 6190

Sequence ID 2L_DroMel_CAF1
Location 17,264,541 – 17,264,658
Length 117
Max. P 0.989543
window9891

overview

Window 1

Location 17,264,541 – 17,264,658
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 89.56
Mean single sequence MFE -35.20
Consensus MFE -30.22
Energy contribution -30.42
Covariance contribution 0.20
Combinations/Pair 1.16
Mean z-score -2.12
Structure conservation index 0.86
SVM decision value 2.17
SVM RNA-class probability 0.989543
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17264541 117 - 22407834
UAAUCAUCAGCCACUAGUUUGGUGGGGUUUUAUUGCCUUUAUAUAUUCCUGUCAAGGAGUGGGAAAACCUGCUACCGAGGGUUCGACUUUCGAUUUCCACCAGACAUAUGUUGCACA
.........((.(((((((((((((((.......((((((......((((....))))(..((....))..)....))))))(((.....))).))))))))))).)).)).))... ( -34.90)
>DroSec_CAF1 107180 117 - 1
UAAUCAUCAGCCACUAGUUUGGUGGGGUUUUAUUGCCUUUAUGUAUUCCUCUCAAGGAGUGGGAAAACCUGCUACGGAGGGUUCGACUUUCGAUUUCCACCAGACAUAUGCUGCACA
.......((((.....(((((((((((.......((((((.((((.((((....))))(..((....))..)))))))))))(((.....))).)))))))))))....)))).... ( -35.90)
>DroSim_CAF1 112256 117 - 1
UAAUCAUCAGCCACUAGUUUGGUGGGGUUUUAUUGCCUUUAUGUAUUCCUCUCAAGGAGUGGGAAAACCUGCUACCGAGGGUUCGACUUUCGAUUUCCACCAGACAUAUGCUGCACA
.......((((.....((((((((((((......)))...........(((((..((((..((....))..)).))))))).(((.....)))...)))))))))....)))).... ( -36.10)
>DroEre_CAF1 106524 104 - 1
UAAUCAUCAGCCACUAGUUUGGUGGGGUUUUAUUGCCCU-------------UUGGGAGUGGGAAAACCUGCUGCAGAGGGUUCGACUUUCGAUUUCCUCCAGACAUAUGUUGCACA
.........((.((((((((((.((((.......(((((-------------(((.(.(..((....))..)).))))))))(((.....))).)))).)))))).)).)).))... ( -34.20)
>DroYak_CAF1 109315 116 - 1
UAAUCAUCAGCCACUAGUUUGGUGGGGUUUUAGUGCCUUUACAUAU-CCUUUUAGGGAGUGGGAAAACUUGCUGCAAAGGGUUCGACUUUCGAUUUCCACCAGACAUAUGUUGCACA
.........((.((((((((((((((((......))).......((-((((((((.((((......)))).))).)))))))(((.....)))...))))))))).)).)).))... ( -34.90)
>consensus
UAAUCAUCAGCCACUAGUUUGGUGGGGUUUUAUUGCCUUUAUAUAUUCCUCUCAAGGAGUGGGAAAACCUGCUACAGAGGGUUCGACUUUCGAUUUCCACCAGACAUAUGUUGCACA
.......((((.....(((((((((((.......((((((.......(((....)))((..((....))..))...))))))(((.....))).)))))))))))....)))).... (-30.22 = -30.42 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:46 2006