Locus 619

Sequence ID 2L_DroMel_CAF1
Location 1,831,390 – 1,831,507
Length 117
Max. P 0.957569
window1013

overview

Window 3

Location 1,831,390 – 1,831,507
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.28
Mean single sequence MFE -34.48
Consensus MFE -20.33
Energy contribution -21.37
Covariance contribution 1.03
Combinations/Pair 1.29
Mean z-score -2.69
Structure conservation index 0.59
SVM decision value 1.48
SVM RNA-class probability 0.957569
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1831390 117 + 22407834
AUUUGCCGUUGUCGAUAUUUUCCUGUCGAACCGAACCGCUGGGG--AAAAAA-GCGCAAGACAAAGGCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAAACGGCAAAAA
.(((((((((.((((((......))))))(((((...(((..((--......-((....).)((((.(((((.....))))).)))).......))...))))))))..))))))))).. ( -38.40)
>DroSec_CAF1 51394 116 + 1
AUUUCCCGUUGUCGAUAUUUUCCUGUCGAACCGAACCGCUGGGG--AAAAAAGGCGGAAGACAAAGGCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAGACGGCAAA--
.....(((((.((((((......))))))(((((.((....)).--......((((......((((.(((((.....))))).)))).....))))......)))))..)))))....-- ( -34.20)
>DroSim_CAF1 31960 116 + 1
AUUUGCCGUUGUCGAUAUUUUCCUGUCGAACCGAACCGCUGGGG--AAAAAAGGCGGAAGACAAAGGCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAAACGGCAAA--
.(((((((((.((((((......))))))(((((.((....)).--......((((......((((.(((((.....))))).)))).....))))......)))))..)))))))))-- ( -40.20)
>DroPer_CAF1 48876 95 + 1
AUUUGCUGUAGUCGAUAUUUCGUUGUCAAAGCGAA-----GGAU--AAAAAA-------AAUA-------ACUAACUUUUCGGG----CAGAUGCCAAAGAUUCGGUGAAACGUUAAGAG
.((..(((.((((....(((((((.....))))))-----)...--......-------....-------............((----(....)))...)))))))..)).......... ( -19.60)
>DroEre_CAF1 41860 112 + 1
AUUUGCCGUUGUCGAUAUUUUCCUGUCGAA-----CCGCUGAGCAAAAAAAA-UCACAAGACAAAGCCGGAAAAACUUUUCCGCUUUCCAAAUGCCAGGAGCUCGGUCAAACGGCAAA--
.(((((((((.((((((......)))))).-----..(((((((........-..........((((.(((((....)))))))))(((........))))))))))..)))))))))-- ( -37.10)
>DroYak_CAF1 16414 110 + 1
AUUUGCCGUUGUCGAUAUUUUCCUGUCGAA-----CCGCUGCGG--AAAAAA-GCGCAAGACAAAGCCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAAAUGGCAAA--
.(((((((((.((((((......))))))(-----(((((((..--......-))(((....((((((((((.....)))))))))).....)))....)))..)))..)))))))))-- ( -37.40)
>consensus
AUUUGCCGUUGUCGAUAUUUUCCUGUCGAACCGAACCGCUGGGG__AAAAAA_GCGCAAGACAAAGGCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAAACGGCAAA__
.(((((((((.((((((......))))))........((((((.........................((((.....))))(((.........))).....))))))..))))))))).. (-20.33 = -21.37 +   1.03) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:08 2006