Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,831,390 – 1,831,507 |
Length | 117 |
Max. P | 0.957569 |
Location | 1,831,390 – 1,831,507 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -34.48 |
Consensus MFE | -20.33 |
Energy contribution | -21.37 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.29 |
Mean z-score | -2.69 |
Structure conservation index | 0.59 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1831390 117 + 22407834 AUUUGCCGUUGUCGAUAUUUUCCUGUCGAACCGAACCGCUGGGG--AAAAAA-GCGCAAGACAAAGGCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAAACGGCAAAAA .(((((((((.((((((......))))))(((((...(((..((--......-((....).)((((.(((((.....))))).)))).......))...))))))))..))))))))).. ( -38.40) >DroSec_CAF1 51394 116 + 1 AUUUCCCGUUGUCGAUAUUUUCCUGUCGAACCGAACCGCUGGGG--AAAAAAGGCGGAAGACAAAGGCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAGACGGCAAA-- .....(((((.((((((......))))))(((((.((....)).--......((((......((((.(((((.....))))).)))).....))))......)))))..)))))....-- ( -34.20) >DroSim_CAF1 31960 116 + 1 AUUUGCCGUUGUCGAUAUUUUCCUGUCGAACCGAACCGCUGGGG--AAAAAAGGCGGAAGACAAAGGCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAAACGGCAAA-- .(((((((((.((((((......))))))(((((.((....)).--......((((......((((.(((((.....))))).)))).....))))......)))))..)))))))))-- ( -40.20) >DroPer_CAF1 48876 95 + 1 AUUUGCUGUAGUCGAUAUUUCGUUGUCAAAGCGAA-----GGAU--AAAAAA-------AAUA-------ACUAACUUUUCGGG----CAGAUGCCAAAGAUUCGGUGAAACGUUAAGAG .((..(((.((((....(((((((.....))))))-----)...--......-------....-------............((----(....)))...)))))))..)).......... ( -19.60) >DroEre_CAF1 41860 112 + 1 AUUUGCCGUUGUCGAUAUUUUCCUGUCGAA-----CCGCUGAGCAAAAAAAA-UCACAAGACAAAGCCGGAAAAACUUUUCCGCUUUCCAAAUGCCAGGAGCUCGGUCAAACGGCAAA-- .(((((((((.((((((......)))))).-----..(((((((........-..........((((.(((((....)))))))))(((........))))))))))..)))))))))-- ( -37.10) >DroYak_CAF1 16414 110 + 1 AUUUGCCGUUGUCGAUAUUUUCCUGUCGAA-----CCGCUGCGG--AAAAAA-GCGCAAGACAAAGCCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAAAUGGCAAA-- .(((((((((.((((((......))))))(-----(((((((..--......-))(((....((((((((((.....)))))))))).....)))....)))..)))..)))))))))-- ( -37.40) >consensus AUUUGCCGUUGUCGAUAUUUUCCUGUCGAACCGAACCGCUGGGG__AAAAAA_GCGCAAGACAAAGGCGGAAAAACUUUCCGGCUUUCCAAAUGCCAAGAGCUCGGUCAAACGGCAAA__ .(((((((((.((((((......))))))........((((((.........................((((.....))))(((.........))).....))))))..))))))))).. (-20.33 = -21.37 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:08 2006