Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,259,964 – 17,260,064 |
Length | 100 |
Max. P | 0.783853 |
Location | 17,259,964 – 17,260,064 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.10 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -14.91 |
Energy contribution | -16.04 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.26 |
Mean z-score | -2.01 |
Structure conservation index | 0.58 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.783853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17259964 100 - 22407834 CUUCCAUGACACGUGUCGUGUGGAUCACUUGCCGGCAGUCCUUUAAAAUGCGAG-------AAAUAUAAUGCUUUUAUUUGAUCUUACUUGCAUUUAAACGUGCCAC .(((((((((....)))))).))).........((((..(.((((((.((((((-------(((((.........))))).......)))))))))))).))))).. ( -20.91) >DroSec_CAF1 102659 107 - 1 CCUCCAUGACACGUGUCGUGGGGAUCACUUGCCGGCAUUCCUUCAAAAUGUGAGAGUUAUAAAAUAUAAUGUUUUUAUAUAAGCUCACUUGCAUUUAACCGCGCAAU .(((((((((....))))))))).....(((((((........(((...(((((...(((((((........)))))))....)))))))).......))).)))). ( -30.76) >DroSim_CAF1 107805 107 - 1 CCUCCAUGACACGUGUCGUGGGGAUCACUUGCCGGCAUACCUUUAAAAUGUUAUAGUUAUAAAAUAUAAUGUUUUUAUACAUGCACACUUGCAUUUAACCGCGCAAA .(((((((((....))))))))).....(((((((.........(((((((((((.........)))))))))))..((.(((((....))))).)).))).)))). ( -30.10) >DroEre_CAF1 102011 103 - 1 UACCCGGGACACGUGUCCUGGAGAUCACUUGC----UUUCCUUUGAAAUGUAAGAGUUGUGAAAUAUGUUGUAUUUAUUUAACCUCAUUUGCAUUAAAACGCGCCAU ...(((((((....)))))))......(((((----((((....)))).)))))...((..((....((((........))))....))..)).............. ( -21.90) >consensus CCUCCAUGACACGUGUCGUGGGGAUCACUUGCCGGCAUUCCUUUAAAAUGUGAGAGUUAUAAAAUAUAAUGUUUUUAUAUAAGCUCACUUGCAUUUAAACGCGCAAU .(((((((((....)))))))))......................(((((((((.......(((((.........))))).......)))))))))........... (-14.91 = -16.04 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:45 2006