Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,252,059 – 17,252,156 |
Length | 97 |
Max. P | 0.740144 |
Location | 17,252,059 – 17,252,156 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 78.99 |
Mean single sequence MFE | -30.21 |
Consensus MFE | -16.67 |
Energy contribution | -18.34 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.15 |
Mean z-score | -1.99 |
Structure conservation index | 0.55 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17252059 97 - 22407834 AAACGCUGGCUAUUAAAGGAGGCAAGGGGUGGGAGAA-AA---GGGGGGAUUUUCCA-AACAGCCUCAAGUGGUUUCUACGGCCAUAAACAAG--UGCCAGUGA ...(((((((........(((((...(..(((((((.-..---.......)))))))-..).)))))..((((((.....)))))).......--.))))))). ( -34.10) >DroSec_CAF1 94783 96 - 1 AAACGUUGGCCAUUAAGGUUGGCAAGGGGUUGGAAAA--A---AGGGGGAUUUUCCA-AACAGCCUCAAGUGGUUUCUACGGCCAUAAACAAG--UGCCAGUGG ((((((..(((.....)))..))..((((((((((((--.---.......)))))))-....))))).....))))((((((((........)--.))).)))) ( -27.80) >DroSim_CAF1 99771 98 - 1 AAACGCUGGCCAUUAAGGUUGGCAAGGGGUUGGAAAAGAA---GGGGGGAUUUUCCA-AACAGCCUCAAGUGGUUUCUACGGCCAUAAACAAG--UGCCAGUGG ...(((((((.........((((..(((((((.....(((---((.....)))))..-..)))))))..((((...)))).))))........--.))))))). ( -32.77) >DroEre_CAF1 94041 98 - 1 AAACGCUGCCCAUUAGAGGAGGCAAGCGGUUGGUGAA-AG---GGGGGGAUUUUUCAAAACAGCCUCAAGUGGCUUCUGCGGCCAUAAACAAG--UGCCAGUGG ...((((..((......)).((((.(.(((((.((((-((---(......)))))))...))))).)..((((((.....)))))).......--)))))))). ( -30.50) >DroYak_CAF1 95761 97 - 1 AAGCGCUGGCCAUUAGAGGAGGCAAAAGUUUGGUGAA-AG---GGGGGGAUUUUUCC-AACAGCCUCAAGUGGCUUCUACGGCCAUAAACAAG--UGCCAGUGA ...((((((((.......(((((.....(((.....)-))---.(..(((....)))-..).)))))..((((((.....))))))......)--.))))))). ( -32.70) >DroAna_CAF1 165034 87 - 1 AAACGCUGCACAUUAGU---GGCCAGGAC-GGGUAGC-AGGGGGAGUGGACCUUCC--AACAGCCUCAAGUGG----------CAUAAACAAGAAAGCCAGUGG ...((((((((....))---)((((....-((((.(.-.(((((.(....))))))--..).))))....)))----------)..............))))). ( -23.40) >consensus AAACGCUGGCCAUUAAAGGAGGCAAGGGGUUGGAAAA_AA___GGGGGGAUUUUCCA_AACAGCCUCAAGUGGUUUCUACGGCCAUAAACAAG__UGCCAGUGG ...(((((((...............(((((((............................)))))))..((((((.....))))))..........))))))). (-16.67 = -18.34 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:42 2006