Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,251,636 – 17,251,739 |
Length | 103 |
Max. P | 0.616535 |
Location | 17,251,636 – 17,251,739 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 86.50 |
Mean single sequence MFE | -21.42 |
Consensus MFE | -18.14 |
Energy contribution | -18.94 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.85 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17251636 103 - 22407834 UGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUACAUUCAACGACAAACAAUGUGAAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUAUGCAAUUUGGUAUCACA .....(((((((((.((((((....))))))...............((..(((((((....))))))))))))))))))......((((......)))).... ( -22.50) >DroSec_CAF1 94389 86 - 1 GGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUGCAUUCAACGACAAACAAUUUGCAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUA----------------- .....(((((((((.((((((....))))))...............((((....(((....)))..))))))))))))).......----------------- ( -19.60) >DroSim_CAF1 99350 103 - 1 GGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUGCAUUCAACGACAAACAAUUUGCAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUAUGCAAUUUGGUAUCAGA .((((((.....((((.((((....)))))))).))))))((....(((.(((((((.(((.(((........))).)))....))))))).)))...))... ( -20.80) >DroEre_CAF1 93629 103 - 1 GGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUGUAUUGAACUGCAAACAAUGUGUAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUACGCAAUUUGGGAUCACA ((((..(((((.((.((((((....))))))((((.(((((((...(((((...(((....))).))))))).))))).....)))))))))))..))))... ( -24.80) >DroYak_CAF1 95340 103 - 1 GGUUUGAAAUUAGCAGGCAAUUAAAAUUGCUAUAUUGAACUAUAAACAAUGUGUAAAGUGACAUUUAUUGGCUAGUUUUAAUUAUAUGCAAUUUGGUAUCACA ...(((((((((((.((((((....))))))...............((((((((......))))..)))))))))))))))....((((......)))).... ( -19.40) >consensus GGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUGCAUUCAACGACAAACAAUGUGCAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUAUGCAAUUUGGUAUCACA .....(((((((((.((((((....))))))...............(((((...(((....))).))))))))))))))........................ (-18.14 = -18.94 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:41 2006