Locus 6184

Sequence ID 2L_DroMel_CAF1
Location 17,246,890 – 17,246,984
Length 94
Max. P 0.983685
window9883

overview

Window 3

Location 17,246,890 – 17,246,984
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 97.87
Mean single sequence MFE -12.24
Consensus MFE -10.24
Energy contribution -10.84
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.68
Structure conservation index 0.84
SVM decision value 1.95
SVM RNA-class probability 0.983685
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17246890 94 - 22407834
UAAAUUAAUUUACACUUGAAACUGGCCAAGCAAAACAACAACAAAAACUGCAAUAACAACACAAAAAAUAAAAGUGUUUUGUUGCCUCAGCAAC
..............((((........))))...................(((((((.(((((...........))))))))))))......... ( -11.80)
>DroSec_CAF1 89871 94 - 1
UAAAUUAAUUUACACUUGAAACUGGCCAAGCCAAACAACAACAAAAACUGCAAUAACAACAAAAAAAAUAAAAGUGUUUUGUUGCCUCAGCAAC
......................((((...))))...............(((.....((((((((...((....)).)))))))).....))).. ( -11.30)
>DroSim_CAF1 93771 94 - 1
UAAAUUAAUUUACACUUGAAACUGGCCAAGCCAAACAACAACAAAAACUGCAAUAACAACAAAAAAAAUAAAAGUGUUUUGUUGCCUCAGCAAC
......................((((...))))...............(((.....((((((((...((....)).)))))))).....))).. ( -11.30)
>DroEre_CAF1 89059 94 - 1
UAAAUUAAUUUACACUUGAAACUGGCCAAGCCAAACAACAACAAAAACUGCAAUAACAACACAAAAAAUAAAAGUGUUUUGUUGCCCCAGCAAC
......................((((...))))................(((((((.(((((...........))))))))))))......... ( -13.40)
>DroYak_CAF1 90600 94 - 1
UAAAUUAAUUUACACUUGAAACUGGCCAAGCCAAACAACAACAAAAACUGCAAUAACAACACAAAAAAUAAAAGUGUUUUGUUGCCCCACCAAC
......................((((...))))................(((((((.(((((...........))))))))))))......... ( -13.40)
>consensus
UAAAUUAAUUUACACUUGAAACUGGCCAAGCCAAACAACAACAAAAACUGCAAUAACAACACAAAAAAUAAAAGUGUUUUGUUGCCUCAGCAAC
......................((((...))))................(((((((.(((((...........))))))))))))......... (-10.24 = -10.84 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:38 2006