Locus 6182

Sequence ID 2L_DroMel_CAF1
Location 17,240,590 – 17,240,681
Length 91
Max. P 0.689218
window9880

overview

Window 0

Location 17,240,590 – 17,240,681
Length 91
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 82.74
Mean single sequence MFE -24.28
Consensus MFE -19.56
Energy contribution -20.20
Covariance contribution 0.64
Combinations/Pair 1.11
Mean z-score -1.63
Structure conservation index 0.81
SVM decision value 0.32
SVM RNA-class probability 0.689218
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17240590 91 - 22407834
-----------CCUCCUCUGCAAAAAUGAAAAAAAGGACGAUGACGUGGCUUUGAUGAGUUGCCAGUUGUCGUCCAGCCGCAA---ACAUUCAAUUGAAUUGCCC
-----------........((((............((((((..((.((((...........))))))..))))))........---...(((....))))))).. ( -24.90)
>DroSec_CAF1 83721 89 - 1
-----------CCUCCUCUGCAAAAAU--AAAGGAUGACGAUGACGUGGCUUUGAUGAGUUGCCAGUUGUCGUCCAGCCGCAA---ACAUUCAAUUGAAUUGCCC
-----------........((((....--...((((((((((...(..((((....))))..)..))))))))))........---...(((....))))))).. ( -25.30)
>DroSim_CAF1 86581 88 - 1
-----------CCUCCUCUGCAAAAA---AAAGGAUGACGAUGACGUGGCUUUGAUGAGUUGCCAGUUGUCGUCCAGCCGCAA---ACAUUCAAUUGAAUUGCCC
-----------........((((...---...((((((((((...(..((((....))))..)..))))))))))........---...(((....))))))).. ( -25.30)
>DroEre_CAF1 83269 82 - 1
-----------CCUCCCCUGCAAA---------AAGGACGAUGACGUGGCUUUGAUGAGUUGCCAGUUGUCGUCCAGCCGCAA---ACAUUCAAUUCAAUUGCCC
-----------.......(((...---------..((((((..((.((((...........))))))..))))))....))).---................... ( -22.90)
>DroYak_CAF1 84410 83 - 1
-----------CCUCCUCUGCAAAA--------AAGGACGAUGACGUGGUUUUGAUGAGUUGCCAGUUGUCGUCCAGCCUCAA---ACAUUCAAUUGAAUGGCCU
-----------........((....--------..((((((..((.((((..(.....)..))))))..))))))........---.(((((....))))))).. ( -25.70)
>DroAna_CAF1 154717 98 - 1
CUUCAUAAAUCAUCCCUCUGCGAAA-------UAAGGAUGAUGACGCGGCAUUGAUGAGUCGCCAGUUGUCCUCCAGCCGCAAAAAACAUUCAAUUGAAUCGCCA
.((((.............((((...-------..((((..((...(((((........)))))..))..)))).....)))).............))))...... ( -21.57)
>consensus
___________CCUCCUCUGCAAAA________AAGGACGAUGACGUGGCUUUGAUGAGUUGCCAGUUGUCGUCCAGCCGCAA___ACAUUCAAUUGAAUUGCCC
...................((((............((((((..((.((((...........))))))..))))))..............(((....))))))).. (-19.56 = -20.20 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:35 2006