Locus 6181

Sequence ID 2L_DroMel_CAF1
Location 17,240,367 – 17,240,457
Length 90
Max. P 0.562561
window9879

overview

Window 9

Location 17,240,367 – 17,240,457
Length 90
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 81.81
Mean single sequence MFE -19.37
Consensus MFE -17.31
Energy contribution -17.53
Covariance contribution 0.23
Combinations/Pair 1.21
Mean z-score -1.24
Structure conservation index 0.89
SVM decision value 0.06
SVM RNA-class probability 0.562561
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17240367 90 + 22407834
UUUU----GCCCGCU--CC-----CUAUAUAUUUCAAUUCCAUUAUCAAGUUUAAUGCUCGGACCAGCGGUUUACUUAGCGGUUGGCCAGACGAAAAUAAA
....----.......--..-----.......((((.....(((((.......)))))...((.(((((.(((.....))).)))))))....))))..... ( -16.60)
>DroPse_CAF1 147845 100 + 1
UCUUU-UCGCUCACGCUUUCUGUUAUAUAUUUUCCAAUUUCAUUAUCAAGUUUAAUGCCUGGAACAUCGGUUUACUUAGCGCAUGGCCAGACGAAAAUAAA
..(((-(((.((..(((...(((((......(((((....(((((.......)))))..)))))....(.....).)))))...)))..)))))))).... ( -14.80)
>DroSec_CAF1 83498 90 + 1
UUUUUUUUG------CCCC-----CCAUAUUUUCCAAUUCCAUUAUCAAGUUUAAUGCUUGGACCAGCGGUUUACUUAGCGGUUGGCCAGACGAAAAUAAA
.........------....-----...(((((((......(((((.......))))).((((.(((((.(((.....))).)))))))))..))))))).. ( -20.10)
>DroSim_CAF1 86353 95 + 1
UUUUU-UUGCUCGCUCCCU-----CUAUAUUUUCCAAUUCCAUUAUCAAGUUUAAUGCUUGGACCAGCGGUUUACUUAGCGGUUGGCCAGACGAAAAUAAA
.....-.............-----...(((((((......(((((.......))))).((((.(((((.(((.....))).)))))))))..))))))).. ( -20.10)
>DroEre_CAF1 83049 88 + 1
C-AU----GCCCGCG--CC-----C-AUAUUUUCCAAUUUCAUUAUCAAGUUUAAUGGUCGGACCAGCGGCUUACUUAGCGGCUGGCCAGACGAAUAUAAA
.-..----.......--..-----.-((((((........(((((.......)))))(((((.(((((.(((.....))).))))))).)))))))))... ( -24.30)
>DroYak_CAF1 84199 90 + 1
UUUG----GCCCGCU--CC-----CUAUAUUUUCCCAUUUCAUUAUCAAGUUUAAUGCUUGGACCAGCGGCUUACUUAGCGGCUAGCCAGACGAAAAUAAA
((((----((.....--..-----..........(((...(((((.......)))))..)))...(((.(((.....))).))).)))))).......... ( -20.30)
>consensus
UUUU____GCCCGCU__CC_____CUAUAUUUUCCAAUUCCAUUAUCAAGUUUAAUGCUUGGACCAGCGGUUUACUUAGCGGUUGGCCAGACGAAAAUAAA
...........................(((((((......(((((.......))))).((((.(((((.(((.....))).)))))))))..))))))).. (-17.31 = -17.53 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:34 2006