| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,232,042 – 17,232,213 |
| Length | 171 |
| Max. P | 0.994443 |
| Location | 17,232,042 – 17,232,141 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 82.69 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.97 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17232042 99 + 22407834 GG---AGCAGCCUCAACAGAUUGCGGCAACUUUGUGACGUUGCGAAAAGGCAAAAAAUAAAGAUCCAAAUGGGGCAAAAAAAAAAAAAAAAUUGAAUGCUCG .(---(((((((.(((....))).)))..((((((....((((......))))...)))))).(((....))).......................))))). ( -23.60) >DroPse_CAF1 137238 80 + 1 AGGGCAGCAGCCUCAACAGAUUGCGGCAACUUUGUGACGUUGCGGAAAGGCAACAGAAAAAUA------------AAAAA-------AAUCAC--AGGC-AA .((((....)))).......(((((....).((((((.(((((......)))))(......).------------.....-------..))))--))))-)) ( -17.30) >DroSec_CAF1 75214 97 + 1 GG---AGCAGCCUCAACAGAUUGCGGCAACUUUGUGACGUUGCGAAAAGGCAAAAAAUAAAGAUUCGAAUGGGGCAAAAAAAAAA--UAUCAUGAAUGCUCG .(---(((((((.(((....))).)))..((((((....((((......))))...)))))).......................--.........))))). ( -22.40) >DroSim_CAF1 77306 96 + 1 GG---AGCAGCCUCAACAGAUUGCGGCAACUUUGUGACGUUGCGAAAAGGCAAAAAAUAAAGAUUCGAAUGGGGCAAAA-AAAAA--UAUCAUGAAUGCUCG .(---(((((((.(((....))).)))..((((((....((((......))))...)))))).................-.....--.........))))). ( -22.40) >DroEre_CAF1 74811 90 + 1 GG---AGCAGCCUCAACAGAUUGCGGCAACUUUGUGACGUUGCGAAAAGGCAAAAA--AAAGAUUCGAAUGGAGGAAAAAA-------AUCAUGAAUGCUCG .(---(((((((.(((....))).)))...((..(((..((((......))))...--.....(((........)))....-------.)))..))))))). ( -20.60) >DroYak_CAF1 75754 92 + 1 GG---AGCAGCCUCAACAGAUUGCGGCAACUUUGUGACGUUGCGAAAAGGCAAAAAAUAAAGAUCCGAAUGGAGGAAAAAA-------AUCAUGAAUGCUCG .(---(((((((.(((....))).)))..((((((....((((......))))...)))))).(((.......))).....-------........))))). ( -24.60) >consensus GG___AGCAGCCUCAACAGAUUGCGGCAACUUUGUGACGUUGCGAAAAGGCAAAAAAUAAAGAUUCGAAUGGGGCAAAAAA_______AUCAUGAAUGCUCG ......((((((.(((....))).)))..((((((....((((......))))...))))))..................................)))... (-14.13 = -14.97 + 0.83)
| Location | 17,232,106 – 17,232,213 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 71.89 |
| Mean single sequence MFE | -19.10 |
| Consensus MFE | -7.39 |
| Energy contribution | -8.30 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.39 |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.994443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17232106 107 - 22407834 ------CUCAGCGCCAACCUAUAUGGGCGAAUGCUUUACUUAUAUUUCCUCAACUUUUUCACCUUCCUUGGGGUUUUUCGAGCAUUCAAUUUUUUUUUUUUUUUUGCCCCAUU ------....(((((..........)))((((((((...........((((((..............))))))......))))))))..................))...... ( -18.07) >DroPse_CAF1 137301 92 - 1 UAUUACAUGGGAGUAAAUGUAUAUGGGAAAAU-CCC--CCCGUUUUUCUUUCGCUUUUCCCUUAUUCUAGGGGCAUUUUU-GCCU--GUGAUU-------UUUUU-------- .....((((((...((((((..(((((.....-...--)))))...............((((......))))))))))..-.)))--)))...-------.....-------- ( -23.40) >DroSec_CAF1 75278 105 - 1 ------CUCAGCGGCAACCCAUAUGGGCGAAUGCUUUACUUAUAUUUCCUCAACUUUUUCACCUUCCUUGGGGUUUUUCGAGCAUUCAUGAUA--UUUUUUUUUUGCCCCAUU ------....(.((((((((....))).((((((((...........((((((..............))))))......))))))))......--........))))).)... ( -23.37) >DroSim_CAF1 77370 104 - 1 ------CUCAGCGGCAACCUAUAUGGGCGAAUGCUUUACUUAUAUUUCCUCAACUUUUUCACCUUCCUUGGGGUUUUUCGAGCAUUCAUGAUA--UUUUU-UUUUGCCCCAUU ------....(.(((((((.....))..((((((((...........((((((..............))))))......))))))))......--.....-..))))).)... ( -21.17) >DroEre_CAF1 74873 89 - 1 ------CUCAAC-CCAAC----------GAAUGCUUUACUUAUAUUUCCUCAACUUUUUCACCUUCCUUGGGGUUUUCCGAGCAUUCAUGAU-------UUUUUUCCUCCAUU ------......-.....----------((((((((.........................((......))((....)))))))))).....-------.............. ( -13.20) >DroYak_CAF1 75818 98 - 1 ------CUCAAC-CCAACGUAUAUGGGCGAAUGCUUUACUUAUAUUUCCUCAACUUUUUCACCUUCCUUGGGAUUUU-CGAGCAUUCAUGAU-------UUUUUUCCUCCAUU ------.(((.(-(((.......)))).((((((((..........(((.(((..............))))))....-.)))))))).))).-------.............. ( -15.40) >consensus ______CUCAGCGCCAACCUAUAUGGGCGAAUGCUUUACUUAUAUUUCCUCAACUUUUUCACCUUCCUUGGGGUUUUUCGAGCAUUCAUGAU_______UUUUUUGCCCCAUU ............................((((((((...........((((((..............))))))......)))))))).......................... ( -7.39 = -8.30 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:33 2006