Locus 6179

Sequence ID 2L_DroMel_CAF1
Location 17,231,790 – 17,231,889
Length 99
Max. P 0.942383
window9876

overview

Window 6

Location 17,231,790 – 17,231,889
Length 99
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 91.44
Mean single sequence MFE -22.16
Consensus MFE -18.16
Energy contribution -19.36
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.82
SVM decision value 1.33
SVM RNA-class probability 0.942383
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17231790 99 + 22407834
GCACA--UGUGCGUAGGAAAAUACAUUU-UUUUGUAUAUGAAUGUAAAUAAAUACGAGCAUAAAGCCCAACUGGAAAGUCACGCUGACUUUCGCUAACCCAA
((..(--(((.((((......(((((((-..........)))))))......)))).))))............(((((((.....)))))))))........ ( -22.00)
>DroSec_CAF1 74972 101 + 1
GCACAUAUGUGCGUAGGGAAAUACAUUU-UUUGUUAUACGAAUGUAAAUAAAUACGAGCACAAUGCCCAACUGGAAAGUCACGCUGACUUUCGCUAACCCAA
((((....))))...(((...(((((((-.(......).)))))))..........(((.((.........))(((((((.....))))))))))..))).. ( -24.60)
>DroSim_CAF1 77061 102 + 1
GCACAUAUGUGCGUAGGGAAAUAAAUUUUUUUGUUAUAUGAAUGUAAAUAAAUACGAGCACAAAGCCCAACUGGAAAGUCACGCUGACUUUCGCUAACCCAA
((((....))))((.(((.((((((....))))))...((..((((......))))..)).....))).))..(((((((.....))))))).......... ( -22.90)
>DroEre_CAF1 74567 96 + 1
GCACA--UGUGCGUAGGGAAAUACAUUU-UUUU---CAUGAAUGUAAAUAAAUACGAGCAAAAAGCCCAACUGAAAAGUCACGCUGACUUUCGCUAACCCAA
(((..--..)))...(((...(((((((-....---...)))))))..........((((((.(((...(((....)))...)))...))).)))..))).. ( -20.60)
>DroYak_CAF1 75510 95 + 1
GCACA--UGUGCGUAGGAAAACUCAUUU-UUU----UAUGAAUGUAAAUAAAUACGAGCAUAAAGCCCAACUGGAAAGUCACGCUGACUUUCGCUAACCCAA
((..(--(((.((((........(((((-...----...)))))........)))).))))............(((((((.....)))))))))........ ( -20.69)
>consensus
GCACA__UGUGCGUAGGGAAAUACAUUU_UUUG_UAUAUGAAUGUAAAUAAAUACGAGCACAAAGCCCAACUGGAAAGUCACGCUGACUUUCGCUAACCCAA
((((....))))...(((...(((((((...........)))))))..........(((........(....)(((((((.....))))))))))..))).. (-18.16 = -19.36 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:31 2006