| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,229,073 – 17,229,165 |
| Length | 92 |
| Max. P | 0.862843 |
| Location | 17,229,073 – 17,229,165 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.98 |
| Mean single sequence MFE | -37.20 |
| Consensus MFE | -23.38 |
| Energy contribution | -24.52 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.862843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17229073 92 + 22407834 UUC-GCUUGGCUU--GGGCCAUUUGGUUACUGCGGUCUUGGAAGUUUACUGCG-GCUGACUCUGUGGCCCAGUGCUGGGUUAAUAGCCGGUAUUAG------------ ...-(((..((((--(((((((..((((((((((((...........))))))-).)))))..))))))))).))..)))................------------ ( -38.60) >DroSec_CAF1 72263 92 + 1 UCC-GCUUGGCUU--GGGCCAUUUGGUUACUGCGGUCUUGGAAGUUUACUGCG-GCUGACUCUGUGGCCCAGUGCUGGGUUAAUAGCCGGUAUUAG------------ ...-(((..((((--(((((((..((((((((((((...........))))))-).)))))..))))))))).))..)))................------------ ( -38.60) >DroSim_CAF1 74312 92 + 1 UCC-GCUUGGCUU--GGGCCAUUUGGUUACUGCGGUCUUGGAAGUUUACUGCG-GCUGACUCUGUGGCCCAGUGCUGGGUUAAUAGCCAGUAUUAG------------ ...-(((..((((--(((((((..((((((((((((...........))))))-).)))))..))))))))).))..)))................------------ ( -38.60) >DroEre_CAF1 71878 93 + 1 UCC-GCUUGGCUU--GGGCCAUUUGGUUACUGCGGUCUUGGAAGCUUACUACGAGCUGACUCUGUGGGCCAGGGCUGGGCUAAUAGCGGGUAUUAG------------ (((-((((((((.--.(.((...((((..(..(((....(..(((((.....)))))..).)))..))))))).)..)))))..))))))......------------ ( -37.90) >DroYak_CAF1 72797 93 + 1 UCC-GCUUGGCUU--GGGCCAUUUGGUUAGUGCGGUCUUGGAAGUUUACUGCGGGCUGACACUCCGGCCCAGUGCUGGGCUAAUAGCGGGUAUUAG------------ (((-(((((((..--..))))...((..((((((((((....((....))..)))))).))))))((((((....))))))...))))))......------------ ( -35.60) >DroAna_CAF1 145128 99 + 1 GCUGGCUGGGCUUUGGGGCCACUUGGUUAUUGCGGUCUGAGAAGUUUACUGUGGCCUGACUCUGCGGUCAGGGGC---------AGCCGUUUCCAGGACGCAUAAAUC ((..(.(((.(.....).))).)..))...((((..(((.((((....((((..(((((((....))))))).))---------))...)))))))..))))...... ( -33.90) >consensus UCC_GCUUGGCUU__GGGCCAUUUGGUUACUGCGGUCUUGGAAGUUUACUGCG_GCUGACUCUGUGGCCCAGUGCUGGGUUAAUAGCCGGUAUUAG____________ ....(((..((....(((((((..(((((.((((((...........))))))...)))))..)))))))...))..)))............................ (-23.38 = -24.52 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:30 2006