Locus 6177

Sequence ID 2L_DroMel_CAF1
Location 17,228,032 – 17,228,126
Length 94
Max. P 0.544833
window9874

overview

Window 4

Location 17,228,032 – 17,228,126
Length 94
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 84.68
Mean single sequence MFE -16.43
Consensus MFE -11.54
Energy contribution -12.38
Covariance contribution 0.84
Combinations/Pair 1.08
Mean z-score -1.64
Structure conservation index 0.70
SVM decision value 0.02
SVM RNA-class probability 0.544833
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17228032 94 - 22407834
AAC------CUUUUAUUCAUCAAAUUACUUAAGCGCCAAACAAAUUGAAUCACAAUUUCAUUUAUCCCCCGUCGUUAUUUGAGGGUAGUGAAAAACGUUU
...------.....................(((((......((((((.....))))))..(((((..(((.(((.....))))))..)))))...))))) ( -12.70)
>DroSec_CAF1 71275 94 - 1
AAC------CUUUUAUUCAUCAAAUUACUUAAGCGCCAAACAAAUUGAAUCACAAUUUCAUUUAUCCCUCAUCGUUUUUUGAGGGUAGUGAAAAACGUUU
...------.....................(((((.(((.....)))........(((((((...((((((........)))))).)))))))..))))) ( -17.10)
>DroSim_CAF1 73303 94 - 1
AAC------CUUUUAUUCAUCAAAUUACCUAAGCGCCAAACAAAUUGAAUCACAAUUUCAUUUAUCCCUCAUCGUUUUUUGAGGGUAGUGAAAAACGUUU
...------.....................(((((.(((.....)))........(((((((...((((((........)))))).)))))))..))))) ( -17.10)
>DroEre_CAF1 70919 98 - 1
AACACAAGUCUUUUAUUCAUCAAAUUAUUUAAGUGGCCAACAAAUUGAAUCACAG--UCAUUUAUCCCCAAUCGCCAUUUGAGGGCAGUGAAAAGCGUUU
.......(..(((((((............((((((((.................)--))))))).((((((.......))).))).)))))))..).... ( -13.83)
>DroYak_CAF1 71818 94 - 1
AAC-UAAAUAUUGUAAU-----AAAUAUUUAAGUGCCAAACAAAUUGAAUCACUAUUUCAUUUAUCCCUCAUCGUUGUUUGAGGGUAGUGAAAAACGUUU
...-((((((((.....-----.))))))))((((.(((.....)))...)))).(((((((...((((((........)))))).)))))))....... ( -21.40)
>consensus
AAC______CUUUUAUUCAUCAAAUUACUUAAGCGCCAAACAAAUUGAAUCACAAUUUCAUUUAUCCCUCAUCGUUAUUUGAGGGUAGUGAAAAACGUUU
.......................................................(((((((...((((((........)))))).)))))))....... (-11.54 = -12.38 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:29 2006