Locus 6174

Sequence ID 2L_DroMel_CAF1
Location 17,212,398 – 17,212,494
Length 96
Max. P 0.554795
window9869

overview

Window 9

Location 17,212,398 – 17,212,494
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 89.56
Mean single sequence MFE -31.10
Consensus MFE -24.86
Energy contribution -24.42
Covariance contribution -0.44
Combinations/Pair 1.22
Mean z-score -1.41
Structure conservation index 0.80
SVM decision value 0.04
SVM RNA-class probability 0.554795
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17212398 96 + 22407834
UGGAAUAGCAUCCCAGGGAGGAUUUCUCCGAGGACUCCG-AGGGGGAAAUUGUUGUCUCAAUGCAUCCCACGGAACAGGAUGAAAAUGGGGGACAGG
........(((((...((((.....))))......((((-.((((...((((......))))...)))).))))...)))))......(....)... ( -28.40)
>DroSec_CAF1 55557 97 + 1
UGGAAUAGCAUCCCAGGGAGGAUUCCUCCGAGGACUCCAAAGGGGGAAAUUGUUGUCUCAAUGCAUCCCACGGAACAGGAUGAAAAUGGGGGACAGG
..........((((..((((..(((....)))..)))).....)))).....(((((((.((.(((((.........)))))...))..))))))). ( -28.90)
>DroSim_CAF1 57410 97 + 1
UGGAAUAGCAUCCCAGGGAGGAUUCCUCCGAGGACUCCAAAGGGGGAAAUUGUUGUCUCAAUGCAUCCCACGGAACAGGAUGAAAAUGGGGGACAGG
..........((((..((((..(((....)))..)))).....)))).....(((((((.((.(((((.........)))))...))..))))))). ( -28.90)
>DroEre_CAF1 55590 95 + 1
UGGAACAGCAGCCCAGGCAGGAUUCCUCCUAGGACUCGG-AGGGGGA-AUUGUUGCCCCAAUGCAUUCUACGCUACAGAAUGAAAAGGGGGGACAGC
.......((.((....))..((((((((((.(....)..-)))))))-)))(((.((((....((((((.......))))))....)))).))).)) ( -34.00)
>DroYak_CAF1 55978 96 + 1
UGGAAUAGCAUCCCGGGCAGGAUUCCUCCUAGGACUCAG-AGGGGGAAAUUGUUGCCCCGAUGCAUUCCACGGAACAGGAUGAAAUUGGGGGACAGG
((((((.(((((..((((((.(((((((((..(...)..-))))))))..).)))))).)))))))))))..................(....)... ( -35.30)
>consensus
UGGAAUAGCAUCCCAGGGAGGAUUCCUCCGAGGACUCCG_AGGGGGAAAUUGUUGUCUCAAUGCAUCCCACGGAACAGGAUGAAAAUGGGGGACAGG
..........((((.....(((.(((.....))).))).....))))..(((((.(((.....(((((.........))))).....))).))))). (-24.86 = -24.42 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:24 2006