| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,206,143 – 17,206,238 |
| Length | 95 |
| Max. P | 0.760998 |
| Location | 17,206,143 – 17,206,238 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 88.00 |
| Mean single sequence MFE | -29.16 |
| Consensus MFE | -21.70 |
| Energy contribution | -22.54 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17206143 95 + 22407834 CCCACUUUUCCGGUCCGCCCUCAUCAGUAAACUGCGGUUACAGGCGUAACAGAAAUUGUUGCCUACUUUUGUGGGCCGCUCAACGUGGAAAAUAC .((((.....((((((((......(((....))).(((.((((.(......)...)))).))).......))))))))......))))....... ( -26.10) >DroSec_CAF1 49430 95 + 1 CCCUCAUUUCCGGUCCGCCCUCAUACGUAAACUGCGGUUACAGGCGUAACAGAAAUUGUUGCCUACUUUUGUGAUCCGCUAAACGUGGAAAAUAU ......(((((((....)).....((((.....(((((((((((.(((((((...))))))))).....))))).))))...))))))))).... ( -23.90) >DroSim_CAF1 51255 95 + 1 CCCCCAUUUCCGGUUCGCCAUCAUCCGUAAACUGCGGUUACAGGCGGAACAGAAAUUGUUGCCUACUUUUGUGGGCCGCUAAACGUGGAAAAUAU ......((((((.((((((.....((((.....)))).....)))))).).......((.((((((....)))))).)).......))))).... ( -30.30) >DroEre_CAF1 49769 94 + 1 GCCCCUGUUCCGGUCCGCCCC-UUCCGUAGGCUGCGGUUACAGGCGUAGCAUAAAUUGUUGCCUACUUUUGUGGGCCGUCCAACGUGGAAAAUAU ..((.((((.((((((((...-....((((((.((((((....((...))...)))))).))))))....))))))))...)))).))....... ( -30.80) >DroYak_CAF1 49860 94 + 1 -CCCCUUUUCCGGUCCGCCCCCAACCGUAAACUGCGGUUACAGGCGUAACAAAAAUUGUUGCCUACUUUUGUGGGCAGCGCAACGUGGAAAAUAU -....(((((((...((((...((((((.....))))))...))))...........(((((((((....)))))))))......)))))))... ( -34.70) >consensus CCCCCUUUUCCGGUCCGCCCUCAUCCGUAAACUGCGGUUACAGGCGUAACAGAAAUUGUUGCCUACUUUUGUGGGCCGCUCAACGUGGAAAAUAU ......((((((...((((.....((((.....)))).....))))...........((.((((((....)))))).))......)))))).... (-21.70 = -22.54 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:16 2006