Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,829,575 – 1,829,676 |
Length | 101 |
Max. P | 0.568421 |
Location | 1,829,575 – 1,829,676 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 89.82 |
Mean single sequence MFE | -25.29 |
Consensus MFE | -18.64 |
Energy contribution | -19.57 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.15 |
Mean z-score | -1.61 |
Structure conservation index | 0.74 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568421 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1829575 101 + 22407834 AGCAGCUGUUGGGCCGCAGCCAUUGUUCCCACUUCCCGGGAAAAAGGAUAAAAGUGCCGAGAUUGGUAGGUGGAAGCAGAAAUGGGUGAAGAAUUAAAA-GA ..((.(((((.(((....))).(((((.((((((.((((......((.........))....)))).)))))).))))).))))).))...........-.. ( -24.10) >DroSec_CAF1 49607 101 + 1 AGCAGCUGUUGGGCCACAGCCAUUGUUACCACUUCCCGGGAAAAAGGAUAAAAGUGCCGAGAUUGGUAGGUGGAAGCAGAAACGGGUGAAGAAUUAAAA-GA ..((.(((((.(((....))).(((((.((((((.((((......((.........))....)))).)))))).))))).))))).))...........-.. ( -26.60) >DroSim_CAF1 30163 101 + 1 AGCAGCUGUUGGGCCACAGCCAUUGUUACCACUUCCCGGGAAAAAGGAUAAAAGUGCCGAGAUUGGUAGGUGGAAGCAGAAACGGGUGAAGAAUUAAAA-GA ..((.(((((.(((....))).(((((.((((((.((((......((.........))....)))).)))))).))))).))))).))...........-.. ( -26.60) >DroEre_CAF1 38106 96 + 1 AGCAGCUGUUGGGCCACAGCCAUUGUUCCCA------GCAAAAAAGGAUAAAAGUGUUGAGAUUGGGAGGUGGAAGAAGCGAUGGCUGAGGAAUUAAAAAGA ..(((((((((..((((..((.....((.((------(((..............))))).))...))..))))......))))))))).............. ( -23.84) >consensus AGCAGCUGUUGGGCCACAGCCAUUGUUACCACUUCCCGGGAAAAAGGAUAAAAGUGCCGAGAUUGGUAGGUGGAAGCAGAAACGGGUGAAGAAUUAAAA_GA ..((.(((((.(((....))).(((((.((((((.((((......((.........))....)))).)))))).))))).))))).)).............. (-18.64 = -19.57 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:06 2006