Locus 6169

Sequence ID 2L_DroMel_CAF1
Location 17,203,766 – 17,203,859
Length 93
Max. P 0.877432
window9859

overview

Window 9

Location 17,203,766 – 17,203,859
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 77.51
Mean single sequence MFE -25.97
Consensus MFE -14.23
Energy contribution -15.37
Covariance contribution 1.14
Combinations/Pair 1.21
Mean z-score -2.08
Structure conservation index 0.55
SVM decision value 0.90
SVM RNA-class probability 0.877432
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17203766 93 + 22407834
AGAGUAUCUGUGCGAAUGAGUCGAGUGCUUGUGCCACAAAAGGCGGCGACUG---UUGCUGUUUGUGUGCAUUGAUUGAGUGCAUUGAGUUGUUGA
...(((....))).((..(.(((((..(((((((((((((.((((((....)---))))).)))))).)))).....)))..).)))).)..)).. ( -29.80)
>DroGri_CAF1 165659 75 + 1
--------------------UUGAGUGUUUGG-GAACAAAAGGCAGCGGCUGCUAUUGCUUUUUGUGUGCAUUGAUUGAGUGCAUUGAGUUGUUGA
--------------------.......((((.-...))))...((((((((((....)).......(((((((.....)))))))..)))))))). ( -18.60)
>DroSec_CAF1 47099 93 + 1
AGAGUAUCUGUGCGAAUGUGUCGAGUGCUUGUGCCACAAAAGGCGGCGACUG---UUGCUGUUUGUGUGCAUUGAUUGAGUGCAUUGAAUUGUUGA
............(((.....(((((..(((((((((((((.((((((....)---))))).)))))).)))).....)))..).))))....))). ( -26.90)
>DroEre_CAF1 47213 93 + 1
AGAGUAUCUGUGCGAGUGAGUCGAGUGCUUGUGCCACAAAAGGCGGCGAUUG---UUGCUGUUUGUGUGCAUUGAUUGAGUGCAUUGAGUUGUUGA
...(((....))).((..(.(((((..(((((((((((((.((((((....)---))))).)))))).)))).....)))..).)))).)..)).. ( -29.50)
>DroWil_CAF1 57598 71 + 1
------------------UGUUGAGUGUUU-UGGCACAAAAGGCGGCAGC------AACUCUGUGUGUGCAUUGAUUGAGUGCAUUGAGUUGUUGA
------------------......((.(((-((...))))).))..((((------(((((.....(((((((.....))))))).))))))))). ( -22.90)
>DroAna_CAF1 122110 93 + 1
AGUGUGUGUGUGCGUCUGAUUCGAGUGUUUGUGCCACAAAAGGCGGCGACUG---UUGCCGUUUGUGUGCAUUGAUUGAGUGCAUUGAGUUGUUGA
.(..(....)..)....((((((((..(((((((((((((.((((((....)---))))).)))))).)))).....)))..).)))))))..... ( -28.10)
>consensus
AGAGUAUCUGUGCGA_UGAGUCGAGUGCUUGUGCCACAAAAGGCGGCGACUG___UUGCUGUUUGUGUGCAUUGAUUGAGUGCAUUGAGUUGUUGA
....................(((((..((((((((((((...(((((((......)))))))))))).)))).....)))..).))))........ (-14.23 = -15.37 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:15 2006