Locus 6167

Sequence ID 2L_DroMel_CAF1
Location 17,193,740 – 17,193,831
Length 91
Max. P 0.618605
window9857

overview

Window 7

Location 17,193,740 – 17,193,831
Length 91
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 82.41
Mean single sequence MFE -19.85
Consensus MFE -12.26
Energy contribution -12.84
Covariance contribution 0.57
Combinations/Pair 1.19
Mean z-score -2.12
Structure conservation index 0.62
SVM decision value 0.17
SVM RNA-class probability 0.618605
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17193740 91 + 22407834
UGUCCACAUCGCCCGACGACUUAUGUAUUUCGGGUCUUGUAGCAUUUUAUGGCA-AACUUGUUUAUUGUCAAUAUUGACAAUGAUACAAACU
.....(((..((((((..((....))...))))))..))).((........)).-...(((((((((((((....))))))))).))))... ( -24.60)
>DroPse_CAF1 91013 85 + 1
UGUCCCCUU---UUGAAGCCUCG----UCUCGACUCUUGUAACAUUUUAUGGCAAAACUUGUUUAUUGUCAAUAUUGACAAUGAUACAAGCC
.........---.....(((...----.....((....))..........)))....((((((((((((((....))))))))).))))).. ( -17.27)
>DroSec_CAF1 38502 87 + 1
UGUCCACAUCGCCCGACGACUUA----UUUUGGGUCUUGUAGCAUUUUAUGGCA-AACUUGUUUAUUGUCAAUAUUGACAAUGAUACAAACU
.....(((..((((((.......----..))))))..))).((........)).-...(((((((((((((....))))))))).))))... ( -20.30)
>DroSim_CAF1 40285 87 + 1
UGUCCACAUCGCCCGACGACUUA----UUUUGGGUCUUGUAGCAUUUUAUGGCA-AACUUGUUUAUUGUCAAUAUUGACAAUGAUACAAACU
.....(((..((((((.......----..))))))..))).((........)).-...(((((((((((((....))))))))).))))... ( -20.30)
>DroEre_CAF1 38733 87 + 1
UGUCCACUUGGCCCAACGACUUA----UUUCGGGUCUUGUAGCACUUUAUGGCA-AACUUGUUUAUUGUCAAUAUUGACAUUGAUACAAACU
.....((..(((((.........----....)))))..)).((.(.....))).-...(((((((.(((((....))))).))).))))... ( -16.92)
>DroAna_CAF1 114259 74 + 1
GGCCCACUUGGCC-----------------UGACUCUUGUAACGUUUUAUGGCA-AACUUGUUUAUUGUCAAUAUUGACAAUGAAACAAGCU
((((.....))))-----------------.............(((....))).-..((((((((((((((....)))))))).)))))).. ( -19.70)
>consensus
UGUCCACAUCGCCCGACGACUUA____UUUCGGGUCUUGUAGCAUUUUAUGGCA_AACUUGUUUAUUGUCAAUAUUGACAAUGAUACAAACU
.(((......((((((.............))))))...((((....))))))).....(((((((((((((....))))))))).))))... (-12.26 = -12.84 +   0.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:13 2006