Locus 6166

Sequence ID 2L_DroMel_CAF1
Location 17,178,908 – 17,179,028
Length 120
Max. P 0.530090
window9856

overview

Window 6

Location 17,178,908 – 17,179,028
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.22
Mean single sequence MFE -31.53
Consensus MFE -23.57
Energy contribution -23.47
Covariance contribution -0.10
Combinations/Pair 1.17
Mean z-score -1.28
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.530090
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17178908 120 - 22407834
UUUUGCAUAGAUCCGCAGCAGCCGAAGGAGGUUCUUUCGCUGCUUUCUGUUUGGCUGCUGCUCCGGUUGGGAGUACUGCAAUCAUAAAUCAUAAAUCAUAGACAGAAACAGGAUAGUCUG
..........((((..((((((.(((((.....)))))))))))(((((((((..(((((((((.....))))))..)))..))................)))))))...))))...... ( -36.29)
>DroSec_CAF1 23781 105 - 1
UUUUGCAUAAAUCCGCAGUAUCCGAAGGAGUUUCUUUCGUUGCUUUCUGUUUGGCUGCUGCUCCUGUUGGCAGUCCUGUAAUCAUA-----------AUAGACAUAAACAGGAUAC----
...(((........)))(((((((((((.....)))))(((....((((((((..(((.(((((....)).)))...)))..)).)-----------)))))....))).))))))---- ( -28.20)
>DroEre_CAF1 24175 109 - 1
UUUGGCAUAUAUCCGCAUUAGCCGAAGGAGCUUCUUGCGUUGCUUUCUGCUUGGCUGCUGCUCCUGCUGGUAGUCCUGCCAUCAUA-----------AUGGUCAGAAACAAGACAAUCUG
...((((......((((..((((....).)))...)))).))))...((((((((((((((....)).)))))).(((((((....-----------)))).)))...)))).))..... ( -30.10)
>consensus
UUUUGCAUAAAUCCGCAGUAGCCGAAGGAGCUUCUUUCGUUGCUUUCUGUUUGGCUGCUGCUCCUGUUGGCAGUCCUGCAAUCAUA___________AUAGACAGAAACAGGAUAAUCUG
..(((((.......((((((((((((((.....)))))...((.....))..))))))))).((....))......)))))....................................... (-23.57 = -23.47 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:12 2006