Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,176,665 – 17,176,785 |
Length | 120 |
Max. P | 0.670429 |
Location | 17,176,665 – 17,176,785 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.11 |
Mean single sequence MFE | -39.95 |
Consensus MFE | -24.60 |
Energy contribution | -24.75 |
Covariance contribution | 0.15 |
Combinations/Pair | 1.53 |
Mean z-score | -1.53 |
Structure conservation index | 0.62 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17176665 120 + 22407834 GUCCGAAUGUAUGUAGCUAGGCCGCAGGUAAGGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUUUGGUUCUAUCACCGAUGGCCUCCAAAUGGCCAUGGUCUUGAGUGCAAUG .......(((((....(.(((((...(((...((((((((((.....))))))))))((((((......))))))......))).((((((.......))))))))))).).)))))... ( -44.00) >DroSec_CAF1 21617 120 + 1 GUCCGAAUGUAUGUAGCUAGGCCGCAGGUAAGGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUCCGGGACUAUGAUCGAUGGCCUCCAAAUGGCCAUGGUCUUGAAUGCAAUG ((((.......((..((...))..))(((...((((((((((.....))))))))))))).............))))...((((.((((((.......))))))))))............ ( -39.50) >DroSim_CAF1 22028 120 + 1 UUCCGAAUGUAUGUAGCUAGGCCGCAGGUAGGGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUCCGGGACUAUGACCGAUGGCCUCCAAAUGGCCAUGGUCUUGAAUGCAAUG .......(((((....(.(((((...(((.((((((((((((.....)))))))))).)).(((((.......)))))...))).((((((.......))))))))))).).)))))... ( -43.40) >DroEre_CAF1 20991 120 + 1 GUCCGAAUGUAUAUGGCCAGGCCGCAGGUGAAGCGAAUGUCUCGCUGGGGCAUUCUCAUCAAGUUUAUUUCUGGGUCUGUGACGGAUGGCCUCCAAAUGGCCAUCAUCUUGAAUACCAUG ...........(((((.((((((.(((((((.(.((((((((.....)))))))).).)))........)))))))))).....(((((((.......)))))))..........))))) ( -41.00) >DroYak_CAF1 22400 120 + 1 CUCCGCAUGUUUAUGGCCAGGCCGCAGGUAAAGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUCUGGAUCUCUGACCGAUGGCCUCCAAAUGGCCAUCGUCUUGAAUACCAUG ...........((((((((((((...)))...((((((((((.....)))))))))).............)))).((...(((.(((((((.......))))))))))..))...))))) ( -41.90) >DroAna_CAF1 88802 120 + 1 UUCCGACUUUUCCGGCACAGGCCACUAACGAUGAGGAAGUCUCGCUGGCUGAUUUUCAGCAGGGUCCUUACAGUUUGCAUAUCCGACGUUCUUCAAGUUGUCCUCACCCUGCAGAGCUUG ....((((((..((((....))).(....)..)..))))))..(((...((.....))(((((((....(((..(((.....(....).....)))..)))....)))))))..)))... ( -29.90) >consensus GUCCGAAUGUAUGUAGCCAGGCCGCAGGUAAGGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUCUGGGUCUAUGACCGAUGGCCUCCAAAUGGCCAUCGUCUUGAAUACAAUG ........((((.........(((.(((((((((((((((((.....))))))))))......))))))).)))......((((.((((((.......))))))))))....)))).... (-24.60 = -24.75 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:11 2006