Locus 6164

Sequence ID 2L_DroMel_CAF1
Location 17,173,190 – 17,173,310
Length 120
Max. P 0.777531
window9854

overview

Window 4

Location 17,173,190 – 17,173,310
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.50
Mean single sequence MFE -39.79
Consensus MFE -18.39
Energy contribution -21.19
Covariance contribution 2.80
Combinations/Pair 1.31
Mean z-score -1.79
Structure conservation index 0.46
SVM decision value 0.55
SVM RNA-class probability 0.777531
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17173190 120 - 22407834
UAUAUUAUCUAUUCGAUCAGCCAAGUAACAACACUUGGUCAUGAAAGCCGCUCUCCGUGGGUAAAUCUCACUUAACAUUUGGCUUUCAUGGAUCGCCUGCCGCACCUCUGUCUUGAGCAA
.............(((((.(((((((......)))))))(((((((((((......(((((.....)))))........))))))))))))))))..........(((......)))... ( -35.94)
>DroPse_CAF1 69794 120 - 1
UAUGGCGUCCAGCCUGUCGGCCAGGCAGCAGCACCGGCAGAUGAAGACCCCCCGGCGCGGCGGCCUGUGGCUGAGGCCAGACGACUCGUCGAUCACCUGGCGGAGCUCCCGGUUGAGCAG
.....((((..(((..((((((((((.((.((.((((..(........)..)))).)).)).)))..))))))))))..))))..((((((......)))))).((((......)))).. ( -49.00)
>DroSec_CAF1 18295 120 - 1
UAUAUUAUCUAUUCGAUCGGCCAAGAAACAGCACUUGGUCAUGAAAGCCCCUCUCCGUGGGUAAGUCUCACUUAACAUCUGGCUUUCAUGGAUCACCUGCCGCAGCUUGGUCUUGAGCAA
...........(((((..(((((((...(.(((..((((((((((((((.......(((((.....))))).........))))))))).)))))..))).)...))))))))))))... ( -38.79)
>DroSim_CAF1 18619 120 - 1
UAUAUUAUCUAUUCGAUCGGCCAAGAAACAGCACUUGGUCAUGAAAGCCCCUCUCCGUGGGUAAGUCUCACUUAGCAUCUGGCUUUCAUGGAUCACCUGCCGCAGCUCUGUCUUGAGCAA
..............(((((((((((........)))))))(((((((((...((..(((((.....)))))..)).....))))))))).))))..........((((......)))).. ( -38.80)
>DroAna_CAF1 84649 120 - 1
UAGGUUGUCCAAUUGAUCGGCUAUGAAGCAGCAUUUGGUCAUAAAGACCCCGUUGCGAGGGGAGUAAUAGCUCAGGUGCUUGCACUCGUCGAUCAUUUGUCGAAGCUCCCUGUUCAGAAG
((((..((.(((.((((((((......(((((....((((.....))))..))))).....((((...(((......)))...)))))))))))).))).....))..))))........ ( -36.40)
>consensus
UAUAUUAUCUAUUCGAUCGGCCAAGAAACAGCACUUGGUCAUGAAAGCCCCUCUCCGUGGGUAAGUCUCACUUAGCAUCUGGCUUUCAUGGAUCACCUGCCGCAGCUCCGUCUUGAGCAA
..............((((.((((((........))))))((((((((((.......(((((.....))))).........))))))))))))))..........((((......)))).. (-18.39 = -21.19 +   2.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:10 2006