Locus 6160

Sequence ID 2L_DroMel_CAF1
Location 17,160,036 – 17,160,128
Length 92
Max. P 0.978239
window9846

overview

Window 6

Location 17,160,036 – 17,160,128
Length 92
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 74.54
Mean single sequence MFE -11.90
Consensus MFE -7.54
Energy contribution -7.86
Covariance contribution 0.32
Combinations/Pair 1.09
Mean z-score -2.08
Structure conservation index 0.63
SVM decision value 1.81
SVM RNA-class probability 0.978239
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17160036 92 + 22407834
UAAGCACAUUUCAUGCUGAUUUUCCUUUGGGCUAUUCCCUUAGCUCACUCUCGAAAUCCCCUCACAUCUGCCCUUUUCCUUCUUAUUUCAGA--
..((((.......))))((((((....(((((((......))))))).....))))))..................................-- ( -13.60)
>DroPse_CAF1 54791 75 + 1
UAAGCACAUUUCAUGCUGAUUUUCCUUUUGGCCAUUCCCAGAGCUGACA-----A--------------GCCCUCCUCCAGCUUCCUCACGACU
..............((((........(((((......)))))(((....-----)--------------)).......))))............ ( -11.00)
>DroSec_CAF1 5478 92 + 1
UAAGCACAUUUCAUGCUGAUUUUCCUUUGGGCUAUUCCCUUAGCUCACUCUUGAAAUCCCCUCACAUCUGCCCUUUUCCUCCUUCAUUCAGA--
..((((.......))))((((((....(((((((......))))))).....))))))..................................-- ( -13.60)
>DroYak_CAF1 6172 92 + 1
UAAGCACACUUCAUGCUGAUUUUCCUUUGGGCUAUUCCCUUAGCUCACUCUCGAAAUCCCCUUACAUCUGCCCAUUUCCUCCUUUUUUCAGA--
..((((.......))))((((((....(((((((......))))))).....))))))..................................-- ( -13.60)
>DroPer_CAF1 56481 75 + 1
UAAGCACAUUUCAUGCUGAUUUUCCUUUUGGCCAUUCCCAGAGCUGACA-----A--------------GCCCUCCUCCAUCUUCCUCACGACU
..((((.......)))).........(((((......)))))(((....-----)--------------))....................... (  -7.70)
>consensus
UAAGCACAUUUCAUGCUGAUUUUCCUUUGGGCUAUUCCCUUAGCUCACUCU_GAAAUCCCCU_ACAUCUGCCCUUUUCCUCCUUCCUUCAGA__
..((((.......))))..........(((((((......)))))))............................................... ( -7.54 =  -7.86 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:02 2006