Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,154,977 – 17,155,073 |
Length | 96 |
Max. P | 0.570918 |
Location | 17,154,977 – 17,155,073 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 72.73 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -12.85 |
Energy contribution | -12.41 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -1.31 |
Structure conservation index | 0.64 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17154977 96 - 22407834 GCUUCCUUUUUUUUUAGAUAAGCAACACCUGUUGCUGUUUUCAAUACGCACUGGGAGAAAAACUUCUUCCAUGUUAUUAUAUUGUUUUGUGGCAAA (((.............((..((((((....))))))....))((((.(((.((((((((....)))))))))))))))............)))... ( -22.00) >DroEre_CAF1 1073 94 - 1 GCUUCCUUU--CCUUAGAUAAGCAACACCUGUUGCUGUUUUCGAUUGGCACUGGGAGAAAAAAUGUGUAUUGGUCAGCAUAUUGUCUUGUGUCAAG .........--.....((..((((((....))))))....))..(((((((...((((...(((((((........))))))).))))))))))). ( -24.60) >DroYak_CAF1 527 75 - 1 GCCUUCUUU--UUUUAGAUAAGCAACACCUGUUGCUGUUUUCGAUUAGCACUGGGAGAAAAA-------------------UUGUUUAGUGUCAUA .........--.....((..((((((....))))))....)).....((((((((.((....-------------------)).)))))))).... ( -13.70) >consensus GCUUCCUUU__UUUUAGAUAAGCAACACCUGUUGCUGUUUUCGAUUAGCACUGGGAGAAAAA_U___U____GU_A__AUAUUGUUUUGUGUCAAA ..(((((.........((..((((((....))))))....))..........)))))....................................... (-12.85 = -12.41 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:01 2006