Locus 6157

Sequence ID 2L_DroMel_CAF1
Location 17,153,728 – 17,153,848
Length 120
Max. P 0.958083
window9841

overview

Window 1

Location 17,153,728 – 17,153,848
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.08
Mean single sequence MFE -24.25
Consensus MFE -21.80
Energy contribution -21.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.90
SVM decision value 1.49
SVM RNA-class probability 0.958083
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17153728 120 - 22407834
CGGCGAAAAAAGAAUUAUACCCCGAAGAAGGGUAAUCAAACCCAAACAGAGCCAAAAGCUUUUAAAUCACAAACAGCAGAACCUGGCACAUAUCCCCAUAUUUGCCUUUGGCGACAUUUU
(((.(...............)))).....((((......)))).......((((((.(((.((........)).))).......((((.((((....)))).))))))))))........ ( -22.76)
>DroSec_CAF1 114593 120 - 1
GGGCGGAAAAAGAAGUAUACCCCGAAGAAGGGUAUUCAAACACAAACAGAGCCAAAAGCUUUUAAAUCACAAACAGCAGAACCUGGCACAUAUCACCAUAUUUGCCUUUGGCGACAUUUU
..............(.((((((.......)))))).).............((((((.(((.((........)).))).......((((.((((....)))).))))))))))........ ( -23.20)
>DroSim_CAF1 126792 120 - 1
GGUCGAAAAAAGAAGUAUACCCCGAAGAAGGGUAAUCAAACCCAAACAGAGCCAAAAGCUUUUAAAUCACAAACAGCAGAACCUGGCACAUAUCCCCAUAUUUGCCUUUGGCGACAUUUU
.(((.............(((((.......)))))................((((((.(((.((........)).))).......((((.((((....)))).)))))))))))))..... ( -25.60)
>DroEre_CAF1 111958 110 - 1
----------GGUUGUAUACCCCGACGAAGGGUACUCAAAUCCAAACAGAGCCAAAAGCUUUUAAAUCACAAACAGCAAAACCUGGCACAUAUCCCCAUAUUUGCCUUUGGCAACAUUUU
----------(((((..(((((.......)))))..)))..)).......((((((.(((.((........)).))).......((((.((((....)))).))))))))))........ ( -25.10)
>DroYak_CAF1 114631 118 - 1
UGACGA-AUUGGAAGUAUACCCCGAUGAAGGGUAAUCAAACCCAAACAGAGCCAAAAGCUUUUAAAUCACAAACAGCAAAACCUGGCACAUAUCCCCAUAUUUGCCUUUGGCGACAUU-U
......-(((((.........)))))...((((......)))).......((((((.(((.((........)).))).......((((.((((....)))).))))))))))......-. ( -24.60)
>consensus
GGGCGAAAAAAGAAGUAUACCCCGAAGAAGGGUAAUCAAACCCAAACAGAGCCAAAAGCUUUUAAAUCACAAACAGCAGAACCUGGCACAUAUCCCCAUAUUUGCCUUUGGCGACAUUUU
.................(((((.......)))))................((((((.(((.((........)).))).......((((.((((....)))).))))))))))........ (-21.80 = -21.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:57 2006