Locus 6155

Sequence ID 2L_DroMel_CAF1
Location 17,152,615 – 17,152,730
Length 115
Max. P 0.937332
window9836

overview

Window 6

Location 17,152,615 – 17,152,730
Length 115
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 74.20
Mean single sequence MFE -28.35
Consensus MFE -14.00
Energy contribution -14.38
Covariance contribution 0.38
Combinations/Pair 1.28
Mean z-score -2.41
Structure conservation index 0.49
SVM decision value 1.26
SVM RNA-class probability 0.937332
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17152615 115 - 22407834
AGCAAGACACUCCAAAAAAUAGGUGCCAA-AUCUGAAAUUAUUAUUCAAGUCAAAUCUGACACCAGGGCGUAUGUGUAAUCUUACCUGGCCAUUAUGUCAGGUAUGCUAGGCACA-A
......................(((((..-...((((.......))))((.((.((((((((....(((.((.(((......))).)))))....)))))))).)))).))))).-. ( -28.50)
>DroSec_CAF1 113466 107 - 1
AGCAAAACACUCCAAAAAAUAGGUGGCAAUAUCUGAAAAUAUUAUUCAAGUCAAAUCUGACACCACGGCGUAUGAGUAAUCUUUCUAGGCCAUUAUGUCUUGCAUGC----------
.((((.(((.............((((.......((((.......)))).((((....)))).))))(((.((.(((......))))).)))....))).))))....---------- ( -23.90)
>DroSim_CAF1 125659 107 - 1
AGCAAGACACUCCAAAAAAUAGGUGGGAAUAUCUGAAUAAAUUAUUCAAGUUAAAUCUGACACCACGGCGUAUGAGUAAUCUUUCUAGGCCAUUAUGUCUUGCAUGC----------
.((((((((.............((((.......((((((...)))))).((((....)))).))))(((.((.(((......))))).)))....))))))))....---------- ( -30.60)
>DroYak_CAF1 113485 106 - 1
AGCGAGACACUCCAAAAAAUAAGUGCCAGAC-----------AAUUCAUAUCGAGUCUGCCACUGGGGCGAAUGAGUAAUCAUACUAGGCUUUUGUGUGAUGCAUGCUUGGCACAGA
.(.(((...)))).........((((((..(-----------(..((((((.(((((((((.....)))..((((....))))...))))))..))))))....))..))))))... ( -30.40)
>consensus
AGCAAGACACUCCAAAAAAUAGGUGCCAAUAUCUGAAAAUAUUAUUCAAGUCAAAUCUGACACCACGGCGUAUGAGUAAUCUUACUAGGCCAUUAUGUCAUGCAUGC__________
.((((((((............((((...................................))))..(((....(((......)))...)))....)))))))).............. (-14.00 = -14.38 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:52 2006