Locus 6154

Sequence ID 2L_DroMel_CAF1
Location 17,152,184 – 17,152,304
Length 120
Max. P 0.806936
window9835

overview

Window 5

Location 17,152,184 – 17,152,304
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.58
Mean single sequence MFE -26.26
Consensus MFE -21.74
Energy contribution -21.50
Covariance contribution -0.24
Combinations/Pair 1.10
Mean z-score -1.56
Structure conservation index 0.83
SVM decision value 0.64
SVM RNA-class probability 0.806936
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17152184 120 + 22407834
UGCCUGUGGAACAGCAAAAAGGCAAACAACUAACUCAUUUUGUGGCUGCCGUCGCCGCCUCUUCUUUCCUUUAUGCCAAUUGUCUGCCACCAACACACGGACACCCAUACAUACGCACAC
(((.((((.....(((.(((((...((((..........))))(((.((....)).)))........))))).)))....((((((...........))))))......)))).)))... ( -24.50)
>DroSec_CAF1 113068 120 + 1
UGCCUGUGGAACAGCAAAAAGGCAAACAACUAACUCAUUUUGUGGCUGCCAUCGCCGCCUCUUCUUCCUUUUAUGCCAAUUGUCUGCCACCGGCACACGGACACCCAUACAUACGCACAC
((((.((((..((((((...((((.((((..........))))(((.((....)).)))..............))))..))).))))))).))))...((....)).............. ( -28.60)
>DroSim_CAF1 125255 120 + 1
UGCCUGUGGAACAGCAAAAAGGCAAACAACUAACUCAUUUUGUGGCUGCCAUCGCCGCCUCUUCUUCCUUUUAUGCCAAUUGUCUGCCACCGGCACACGGACACCCAUACAUACGCACAC
((((.((((..((((((...((((.((((..........))))(((.((....)).)))..............))))..))).))))))).))))...((....)).............. ( -28.60)
>DroEre_CAF1 110470 118 + 1
UGUCUGUGGAACAGCAAAAAGGCAAACAACUAACUCAUUUUGUGGCUUCCAUCGCUGCCUCUUCUUCCCUUUAUGCCAAUUGUCUGCCAACAGCACACGGCCACCCAUACACACGCA--C
(((.(((((....(((.(((((...((((..........))))(((..........)))........))))).)))...((((.(((.....))).))))....))))).)))....--. ( -21.70)
>DroYak_CAF1 113053 120 + 1
UGUCUGUGGAACAGCAAAAAGGCAAACAACUAACUCAUUUUGUGGCUGCCAUCGCUGCCUCCUCUUUCCUUUAUGCCAAUUGUCUGCCACCAGCCCACGGACACCAAUACAUACGCAUAC
(((((((((....(((.(((((...((((..........))))(((.((....)).)))........))))).))).......(((....))).)))))))))................. ( -27.90)
>consensus
UGCCUGUGGAACAGCAAAAAGGCAAACAACUAACUCAUUUUGUGGCUGCCAUCGCCGCCUCUUCUUCCCUUUAUGCCAAUUGUCUGCCACCAGCACACGGACACCCAUACAUACGCACAC
(((.((((.....(((.(((((...((((..........))))(((.((....)).)))........))))).)))....((((((...........))))))......)))).)))... (-21.74 = -21.50 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:51 2006