Locus 6153

Sequence ID 2L_DroMel_CAF1
Location 17,151,409 – 17,151,529
Length 120
Max. P 0.784568
window9834

overview

Window 4

Location 17,151,409 – 17,151,529
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -28.64
Consensus MFE -24.86
Energy contribution -24.10
Covariance contribution -0.76
Combinations/Pair 1.20
Mean z-score -1.38
Structure conservation index 0.87
SVM decision value 0.57
SVM RNA-class probability 0.784568
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17151409 120 - 22407834
CGGUGCAGGACCCUUUGCGUAAAUGGAGUGUGUCCUUUUUUCUACUGCAGACUACAGAAACAACAACUGACUGCACAUUAAAAAUUAAAAAAGCCAACAGAACGGCAAGGAAACUCGAAA
....(((((....))))).......((((...(((((........(((((....(((.........))).))))).................(((........)))))))).)))).... ( -23.60)
>DroSec_CAF1 112297 120 - 1
CGGUGCAGGACCCACUGCGUAAAUGGAGUGUGUCCUUUUUUCUACUGCAGACUACGGCAACAACAACUGACUGCACAUUAAAAAUUAAAAAAGCCAACAGAACGGCAAGGAAACUCGAAA
..(((((((((.((((.((....)).)))).))))............(((.....(....).....)))..)))))................(((........))).((....))..... ( -28.20)
>DroSim_CAF1 124493 120 - 1
CGGUGCAGGACCCACUGCGUAAAUGGAGUGUGUCCUUUUUUCUACUGCAGACUACGGCAACAACAACUGACUGCACAUUAAAAAUUAAAAAAGCCAACAGAACGGCAAGGAAACUCGAAA
..(((((((((.((((.((....)).)))).))))............(((.....(....).....)))..)))))................(((........))).((....))..... ( -28.20)
>DroEre_CAF1 109704 120 - 1
CGGUGCAGGACCCACUGCGUAAAUGGAGUGUGUCCUUUUUUCAACUGCAGACUACGGCAACAACAAGCGGCUGCACAUUAAAAAUUAAAAAAGCCAACAGAAGGGCAAGGACAUUUGAAG
..(((((((((.((((.((....)).)))).)))).........((((.(....)(....).....)))).)))))................(((........))).............. ( -27.80)
>DroYak_CAF1 112270 120 - 1
CGGUGCAGGACAUACUGCGUAAAUGGAGUGUGUCCUUUUUUCUACUGCAGACUACGGCAACAACAACCGACUGCACAUUAAAAAUUAAAAAAGCCAACCGAACGGCAAGGAAACUUGAAG
((((((((((((((((.((....)).))))))))))(((((....(((((....(((.........))).)))))....)))))........))..)))).....((((....))))... ( -35.40)
>consensus
CGGUGCAGGACCCACUGCGUAAAUGGAGUGUGUCCUUUUUUCUACUGCAGACUACGGCAACAACAACUGACUGCACAUUAAAAAUUAAAAAAGCCAACAGAACGGCAAGGAAACUCGAAA
....((((......)))).....(.((((...(((((........(((((....(((.........))).))))).................(((........)))))))).)))).).. (-24.86 = -24.10 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:50 2006