Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,149,758 – 17,149,867 |
Length | 109 |
Max. P | 0.931144 |
Location | 17,149,758 – 17,149,867 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -25.28 |
Energy contribution | -25.88 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.91 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17149758 109 - 22407834 AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGCCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAG----------- ....................................(((((..((((.....))))((((((((.(((..(((........)))..))))))).)))).....))))).----------- ( -23.10) >DroSec_CAF1 110585 120 - 1 AUUUAACAUUUUUCCAACACUUUGAAAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAGACAGACAUAAG ..................................((((((((.((((.....))))((((((((.(((..(((........)))..))))))).))))....)))))))).......... ( -28.10) >DroSim_CAF1 122785 120 - 1 AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAGACAGACGGAAG ...........((((........(.....)....((((((((.((((.....))))((((((((.(((..(((........)))..))))))).))))....)))))))).....)))). ( -30.80) >DroEre_CAF1 108050 120 - 1 AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAACGUUUAACCCGCAGACAGACGCAAG ..............................((..((((((((.((((.....))))....((((.(((..(((........)))..))))))).........)))))))).....))... ( -25.80) >DroYak_CAF1 110542 120 - 1 AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAGACAGACGAAAG ............................((((..((((((((.((((.....))))((((((((.(((..(((........)))..))))))).))))....))))))))..).)))... ( -30.70) >consensus AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAGACAGACG_AAG ..................................((((((((.((((.....))))((((((((.(((..(((........)))..))))))).))))....)))))))).......... (-25.28 = -25.88 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:46 2006