Locus 6149

Sequence ID 2L_DroMel_CAF1
Location 17,148,880 – 17,149,000
Length 120
Max. P 0.661350
window9826

overview

Window 6

Location 17,148,880 – 17,149,000
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.83
Mean single sequence MFE -34.16
Consensus MFE -28.30
Energy contribution -28.54
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.83
SVM decision value 0.27
SVM RNA-class probability 0.661350
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17148880 120 - 22407834
UAAAUGCAAUUUGCGGCGCUGAAAAGACGGCUUAAGGCGAUGCCAAGUGCCUGGUUCUUUGAGCCAACUAACAGCCAAGGCAACUUUUCCUUUGGCCCCGUCCCUUUGCCAUAUGAAUUA
.....((((...((((.(((((((((..(((((((((....((((......)))).)))))))))........((....))..))))))....))).))))....))))........... ( -36.10)
>DroSec_CAF1 109663 120 - 1
UAAAUGCAAUUUGCGGCGCUGAAAAGACGGCUUAAGGCGAUGCCAAGUGCCUGGUUCUUUGAGCCAACUAACGGCCAAGGCAACUUUUCCUUUGGCCCCGUCCCUUUGCCAUAUGAAUUA
.....((((...((((.((..((.....(((((((((....((((......)))).))))))))).......((..(((....)))..))))..)).))))....))))........... ( -36.70)
>DroSim_CAF1 121894 120 - 1
UAAAUGCAAUUUGCGGCGCUGAAAAGACGGCUUAAGGCGAUGCCAAGUGCCUGGUUCUUUGAGCCAACUAACAGCCAAGGCAACUUUUCCUUUGGCCCCGUCCCUUUGCCAUAUGAAUUA
.....((((...((((.(((((((((..(((((((((....((((......)))).)))))))))........((....))..))))))....))).))))....))))........... ( -36.10)
>DroEre_CAF1 107253 106 - 1
UAAAUGCAAUUUGCGGCGCUGAAAAGACGGCUUAAGGCGACGCCAAGUGCCUCGUUCUUUGAGCAACCUAACAGCCAAGGCAACUUUUCCU--------------UUGCCAUAUGAAUUA
.....((.....))((((..((((((...(((((((((((.((.....)).)))..)))))))).........((....))..))))))..--------------.)))).......... ( -27.80)
>DroYak_CAF1 109734 120 - 1
UAAAUGCAAUUUGCGGCGCUGAAAAGACGGCUUAAGGCGAUGCCAAGUGCCUGGUUCUUUGAGCCAACUAGCAGCCAAGGCAACUUUUCCUUUGCUCCCGUCCCUUUGCCAUAUGAAUUA
.....((((...((((.((.((((((..(((((((((....((((......)))).)))))))))........((....))..))))))....))..))))....))))........... ( -34.10)
>consensus
UAAAUGCAAUUUGCGGCGCUGAAAAGACGGCUUAAGGCGAUGCCAAGUGCCUGGUUCUUUGAGCCAACUAACAGCCAAGGCAACUUUUCCUUUGGCCCCGUCCCUUUGCCAUAUGAAUUA
.....((.....))(((((((...((..(((((((((....((((......)))).)))))))))..))..)))).(((....))).....................))).......... (-28.30 = -28.54 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:42 2006