Locus 6146

Sequence ID 2L_DroMel_CAF1
Location 17,138,901 – 17,139,021
Length 120
Max. P 0.939134
window9817

overview

Window 7

Location 17,138,901 – 17,139,021
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.42
Mean single sequence MFE -28.92
Consensus MFE -25.84
Energy contribution -26.12
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -1.61
Structure conservation index 0.89
SVM decision value 1.30
SVM RNA-class probability 0.939134
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17138901 120 - 22407834
CUUGAAGCCCUUAAGUAAAUUAUUGCUAAUGGCCUUUACAGAUGGGAAUCGCUUGCUAGCAAAGUAAUCACAACACGUGAUUGAUUGAAAUCAAUUUCCCGCCAUAGACAUCUGUGAGUU
(((((((.((...(((((....)))))...)).))))).))..(((((..(((....)))....(((((((.....)))))))((((....)))))))))(((((((....))))).)). ( -29.00)
>DroSec_CAF1 107306 120 - 1
CUUGAAGCCCUUAAGUAAAUUAUUGCUAAUGGCCUUUACAAUUCGGAAUCGCUUGCUAGCAAAGUAAUCACAACUCGUGAUUGAUUGAAAUCAAUUUCCCGCCAUAGACAUCUGUGAGUU
..(((((.((...(((((....)))))...)).)))))......((((..(((....)))....(((((((.....)))))))((((....)))))))).(((((((....))))).)). ( -25.00)
>DroSim_CAF1 119534 120 - 1
CUUGAAGCCCUUAAGUAAAUUAUUGCUAAUGGCCUUUACAGAUGGGAAUCGCUUGCUAGCAAAGUAAUCACAACACGUGAUUGAUUGAAAUCAAUUUCCCGCCAUAGACAUCUGUGAGUU
(((((((.((...(((((....)))))...)).))))).))..(((((..(((....)))....(((((((.....)))))))((((....)))))))))(((((((....))))).)). ( -29.00)
>DroEre_CAF1 104820 120 - 1
CUUUAAGUCCUUAAGUAAAUUAUUGCUAAUGGCCUUUGCAGAUGGGAAUCGCUUGCUAGCAAAGUAAUCACAACACGUGAUUGAUUGAAAUCAAUUUCCCGUCAGAGACAUCUGUGAGUU
.....((.((...(((((....)))))...)).))(..((((((((((..(((....)))....(((((((.....)))))))((((....)))))))))(((...))))))))..)... ( -29.30)
>DroYak_CAF1 107301 120 - 1
CUUAAAGCCCUUAAGUAAAUUAUUGCUAAUGGCCUUUACAGAUGGGAAUCGCUUGCUAGCAAAGUAAUCACAACACGUGAUUGAUUGAAAUCAAUUUCCCGUCAGAGACAUCUGUGAGUU
......(((.(((.((((....))))))).))).((((((((((((((..(((....)))....(((((((.....)))))))((((....)))))))))(((...)))))))))))).. ( -32.30)
>consensus
CUUGAAGCCCUUAAGUAAAUUAUUGCUAAUGGCCUUUACAGAUGGGAAUCGCUUGCUAGCAAAGUAAUCACAACACGUGAUUGAUUGAAAUCAAUUUCCCGCCAUAGACAUCUGUGAGUU
......(((.(((.((((....))))))).))).((((((((((((((..(((....)))....(((((((.....)))))))((((....))))))))(......).)))))))))).. (-25.84 = -26.12 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:33 2006