Locus 6145

Sequence ID 2L_DroMel_CAF1
Location 17,138,012 – 17,138,131
Length 119
Max. P 0.669438
window9816

overview

Window 6

Location 17,138,012 – 17,138,131
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.31
Mean single sequence MFE -24.82
Consensus MFE -20.66
Energy contribution -20.90
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.55
Structure conservation index 0.83
SVM decision value 0.29
SVM RNA-class probability 0.669438
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17138012 119 + 22407834
ACGGGCCACAAAACAUCAGAAUUCAUUGGCCUCUGCCAAGUUUUGUUUAUCCUUUCGCUG-CCUUGGCAUAUAAACGCUUCCUCUGCCUUGGCUUUCCCCAGCCAAAUCAAUACAAAAUU
...(((.(((((((....(....).(((((....)))))))))))).............(-((..((((...............))))..)))........)))................ ( -25.56)
>DroSec_CAF1 106408 119 + 1
ACGGGCCACAAAACAUCAGAAUUCAUUGGCCUCUGCCAAGUUUUGUUUAUCCUUUCGCUG-CCGUGGCAUAUAAACGCUUCCUCUGCCUUGGCUUUCCCCAGCCAAAUCAAUACAAAAUU
...(((.(((((((....(....).(((((....)))))))))))).............(-(((.((((...............)))).))))........)))................ ( -25.46)
>DroSim_CAF1 118635 119 + 1
ACGGGCCACAAAACAUCAGAAUUCAUUGCCCUCUGCCAAGUUUUGUUUAUCCUUUCGCUG-CCUUGGCAUAUAAACGCUUCCUCUGUCUUGGCUUUCCCCAGCCAAAUCAAUACAAAAUU
..((((.....................))))..(((((((....((..........))..-.)))))))...............((..((((((......))))))..)).......... ( -21.20)
>DroEre_CAF1 103956 119 + 1
ACGGGCAACAAAACAUCAGAAUUCAUUGGCCUCUGCCAAGUUUUGUUUAUCCUUUCGCUG-CCGUGGCAUAUAAACGCUUCCUCCGCGUUGGCUUUCCCUAGCCAAAUCAAUACAAAAUU
..(((.((((((((....(....).(((((....)))))))))))))..)))......((-(....)))....(((((.......)))))((((......))))................ ( -27.40)
>DroYak_CAF1 106420 120 + 1
ACGGGCAAAAAAACAUCAGAAUUCAUUGGCCUCUGCCAAGUUUUGUUUAUCCUUUCGCUGGUCGUGGCAUAUAAACGCUUCCUCUGCCUUGGCUUUCCCCAGCCAAAUCAAUACAAAAUU
..(((((..(((((....(....).(((((....))))))))))((((((....((((.....))))...))))))........)))))(((((......)))))............... ( -24.50)
>consensus
ACGGGCCACAAAACAUCAGAAUUCAUUGGCCUCUGCCAAGUUUUGUUUAUCCUUUCGCUG_CCGUGGCAUAUAAACGCUUCCUCUGCCUUGGCUUUCCCCAGCCAAAUCAAUACAAAAUU
..(((..(((((((....(....).(((((....))))))))))))...)))....(((......)))........((.......)).((((((......)))))).............. (-20.66 = -20.90 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:32 2006