Locus 6142

Sequence ID 2L_DroMel_CAF1
Location 17,136,582 – 17,136,702
Length 120
Max. P 0.949129
window9809

overview

Window 9

Location 17,136,582 – 17,136,702
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.11
Mean single sequence MFE -27.52
Consensus MFE -25.54
Energy contribution -25.78
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.51
Structure conservation index 0.93
SVM decision value 1.39
SVM RNA-class probability 0.949129
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17136582 120 + 22407834
CAAAAUGCGCAGCACUUGUGUGCAGUUGUCGCCGCCACAAAGUAAAGAGAAAAGCUGGGAAAAGCGCAUAAUGGUGGGGAAAAGCGGUGAAAAGCGGGGAAAAGCGGGGAAACUGCCAAU
.....(.(((.((((....)))).....(((((((..................(((......))).(((....))).......)))))))...))).).....((((.....)))).... ( -31.10)
>DroSec_CAF1 104966 100 + 1
CAAAAUGCGCAGCACUUGUGUGCAGUUGUCGCCGCCACAAAGUAAAGAGAAAAGCUGGGAAAAGCGCAUAAUGGUAAGGAG--------------------AAGCGGGGAAACUGCCAAU
......((((((...))))))((((((.((.((((..................(((......)))((......))......--------------------..)))).)))))))).... ( -23.90)
>DroSim_CAF1 117173 100 + 1
CAAAAUGCGCAGCACUUGUGUGCAGUUGUCGCCGCCACAAAGUAAAGAGAAAAGCUGGGAAAAGCGCAUAAUGGUGGGGAA--------------------AAGCGGGGAAACUGCCAAU
.......(((.((((....)))).....((.(((((((........)......(((......)))......)))))).)).--------------------..)))((....))...... ( -26.90)
>DroEre_CAF1 102519 100 + 1
CAAAAUGCGCAGCACUUGUGUGCAGUUGUCGCCGCCACAAAGUAAAGAGAAAAGCUGGGAAAAGCGCAUAAUGGCGGGGAA--------------------AAGCGGGGAAACUGCCAAU
.......(((.((((....)))).....((.(((((((........)......(((......)))......)))))).)).--------------------..)))((....))...... ( -28.80)
>DroYak_CAF1 105016 100 + 1
CAAAAUGCGCAGCACUUGUGUGCAGUUGUCGCCGCCACAAAGUAAAGAGAAAAGCUGGGAAAAGCGCAUAAUGGUGGGGAA--------------------AAGCGGGGAAACUGCCAAU
.......(((.((((....)))).....((.(((((((........)......(((......)))......)))))).)).--------------------..)))((....))...... ( -26.90)
>consensus
CAAAAUGCGCAGCACUUGUGUGCAGUUGUCGCCGCCACAAAGUAAAGAGAAAAGCUGGGAAAAGCGCAUAAUGGUGGGGAA____________________AAGCGGGGAAACUGCCAAU
.......(((.((((....)))).....((.(((((((........)......(((......)))......)))))).)).......................)))((....))...... (-25.54 = -25.78 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:26 2006