Locus 6140

Sequence ID 2L_DroMel_CAF1
Location 17,135,706 – 17,135,826
Length 120
Max. P 0.837562
window9803

overview

Window 3

Location 17,135,706 – 17,135,826
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.17
Mean single sequence MFE -34.56
Consensus MFE -32.14
Energy contribution -32.38
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.43
Structure conservation index 0.93
SVM decision value 0.74
SVM RNA-class probability 0.837562
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17135706 120 - 22407834
AAGACCACGGAGCAGACCCAAAAGCGGAUGCGAUAAGCUUAACCCAUCCGCACACUCAGUGGAGGCAUUGAUUACCAGCGGCCCAAAUAAAUUACGAGGGCUCAGUACUCUCUGGUCCAC
..(((((.((((...........(((((((.(...........))))))))((..((((((....))))))........(((((.............)))))..)).)))).)))))... ( -34.52)
>DroSec_CAF1 104096 120 - 1
AAGACCACGGAGCAGACCCAAAAGCGGAUGCGAUAAGCUUAACCCAUCCUCACACUCAGUGGAGGCAUUGAUUACCAGCGGCCCAAAUAAAUUACGAGGGCUCAGUACUCCCUGGUCCAC
..(((((.((((...((......((((..((.....))......((.((((.(((...)))))))...))....)).))(((((.............)))))..)).)))).)))))... ( -32.82)
>DroSim_CAF1 116289 120 - 1
AAGACCACGGAGCGGACCCAAAAGCGGAUGCGAUAAGCUUAACCCAUCCGCACACUCAGUGGAGGCAUUGAUUACCAGCGGCCCAAAUAAAUUACGAGGGCUCAGUACUCUCUGGUCCAC
..(((((.((((.((........(((((((.(...........))))))))....((((((....))))))...))...(((((.............))))).....)))).)))))... ( -36.82)
>DroEre_CAF1 101678 120 - 1
AAGACCACGGAGCAGACCCAAAAGCGGAUGUGAUAAGCUUAACCCAUCCGCACACUCAGUGGAGGCAUUGAUUACCAGCGGCCCAAAUAAAUUACGAGGUCUCAGUACUCUCUGGUCCAC
..(((((.((((.((((((....(((((((.(...........))))))))........(((.(.(.(((.....))).).))))..........).))))).....)))).)))))... ( -34.10)
>DroYak_CAF1 104121 120 - 1
AAGACCACGGAGCAGACCCAAAAGCGGAUGUGAUAAGCUUAACCCAUCCGCACACUCAGUGGAGGCAUUGAUUACCAGCGGCCCAAAUAAAUUACGAGGGCUCAGUACUCUCUGGUCCAC
..(((((.((((...........(((((((.(...........))))))))((..((((((....))))))........(((((.............)))))..)).)))).)))))... ( -34.52)
>consensus
AAGACCACGGAGCAGACCCAAAAGCGGAUGCGAUAAGCUUAACCCAUCCGCACACUCAGUGGAGGCAUUGAUUACCAGCGGCCCAAAUAAAUUACGAGGGCUCAGUACUCUCUGGUCCAC
..(((((.((((...........(((((((.(...........))))))))((..((((((....))))))........(((((.............)))))..)).)))).)))))... (-32.14 = -32.38 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:20 2006