Locus 614

Sequence ID 2L_DroMel_CAF1
Location 1,827,137 – 1,827,251
Length 114
Max. P 0.627714
window1005

overview

Window 5

Location 1,827,137 – 1,827,251
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 97.37
Mean single sequence MFE -27.24
Consensus MFE -25.24
Energy contribution -25.32
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.22
Structure conservation index 0.93
SVM decision value 0.19
SVM RNA-class probability 0.627714
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1827137 114 + 22407834
AUUUGGCCAGCGGCCAUAAAUGUUAUUAAACUUUCAGUUGGUUUUGUGGCUGGGACUUGUAAUAACUUGCUGCCGUCAGAUGAAUCACUCUAUUAAGUCGAUUACAAUUUAUUA
(((((((..(((((.......(((((((...(..(((((........)))))..)....)))))))..))))).))))))).(((((((......))).))))........... ( -26.10)
>DroSec_CAF1 47155 114 + 1
AUUUGGCCAGCGGCCAUAAAUGUUAUUAAACUUUCAGUUGGUUUUGUGGCUGGGACUUGUAAUAACUUGCUGCCGUCAGAUGAAUCACUCUAUUAAGUCGAUUACAAUUUAUUA
(((((((..(((((.......(((((((...(..(((((........)))))..)....)))))))..))))).))))))).(((((((......))).))))........... ( -26.10)
>DroSim_CAF1 27647 114 + 1
AUUUGGCCAGCGGCCAUAAAUGUUAUUAAACUUUCAGUUGGUUUUGUGGCUGGGACUUGUAAUAACUUGCUGCCGUCAGAUGAAUCACUCUAUUAAGUCGAUUACAAUUUAUUA
(((((((..(((((.......(((((((...(..(((((........)))))..)....)))))))..))))).))))))).(((((((......))).))))........... ( -26.10)
>DroEre_CAF1 35687 114 + 1
AUUUGGCCAGCGGCCAUAAAUGUUAUUAAACUUUCAGUUGGUUUUGUGGCUGGGAGUUGUAAUAACUUGCUGCCGUCAGAUGGAUCACUCAAUUAAGUCGAUUACAAUUUAUUA
(((((((..(((((.......(((((((((((..(((((........)))))..)))).)))))))..))))).))))))).(((((((......))).))))........... ( -31.80)
>DroYak_CAF1 12091 114 + 1
AUUUGGCCAGCAGCCAUAAAUGUUAUUAAACUUUCAGUUGGUUUUGUGGCUGGGCGUUGUAAUAACCUGCUGCCGUCAGACGAAUCACUCUAUUAAGUCGAUUACAAUUUAUUA
.((((((((((((........((((((((((.(((((((........))))))).))).)))))))))))))..))))))..(((((((......))).))))........... ( -26.10)
>consensus
AUUUGGCCAGCGGCCAUAAAUGUUAUUAAACUUUCAGUUGGUUUUGUGGCUGGGACUUGUAAUAACUUGCUGCCGUCAGAUGAAUCACUCUAUUAAGUCGAUUACAAUUUAUUA
(((((((..(((((.......(((((((...((((((((........))))))))....)))))))..))))).))))))).(((((((......))).))))........... (-25.24 = -25.32 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:00 2006