Locus 6138

Sequence ID 2L_DroMel_CAF1
Location 17,134,602 – 17,134,722
Length 120
Max. P 0.544451
window9798

overview

Window 8

Location 17,134,602 – 17,134,722
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 86.87
Mean single sequence MFE -23.93
Consensus MFE -19.90
Energy contribution -20.13
Covariance contribution 0.23
Combinations/Pair 1.18
Mean z-score -1.67
Structure conservation index 0.83
SVM decision value 0.02
SVM RNA-class probability 0.544451
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17134602 120 - 22407834
UGGUACAUUAAAAAUAAGGCUAACUAAACUAAAAAUAUUUUUAUGCGAAAGCGUUUGAAUUAAAUUUUAGACAAAAGGAAUUUAAAAACGUUCAGUAAGACUUAUUGUUGCCCGUGCCAU
((((((..(((.((((((.((.(((.(((........(((..((((....))))..)))(((((((((........)))))))))....))).))).)).)))))).)))...)))))). ( -27.90)
>DroSec_CAF1 103063 117 - 1
UGGUAUGUUAAAAAUAAGGCUAACUAAACUUA-AUUAUUAUUCUGCGCAAGCGUUUGAAUUAAAUUCUAGGCAAUAUGAAUU-AAAAAAGUUCGG-AAAACAUAUUGUUACCCGUGCCAU
((((((((((((..((((..........))))-...........((....)).)))))...........(((((((((((((-.....)))))(.-....)))))))))...))))))). ( -20.70)
>DroSim_CAF1 115249 118 - 1
UGGUAUAUUAAAAAUAGGGCUAGCUAAACUUA-AUUAUUUUUCUGCGCAAGCGUUUGAAUUAAAUUCUAGACAAUAUGAAUUUAAAAACGUUCAG-AAAACCUCUUGUUGCCUGUGCCAU
(((((((.....(((((((....)........-.....(((((((....(((((((...((((((((..........))))))))))))))))))-))))...))))))...))))))). ( -23.20)
>consensus
UGGUAUAUUAAAAAUAAGGCUAACUAAACUUA_AUUAUUUUUCUGCGCAAGCGUUUGAAUUAAAUUCUAGACAAUAUGAAUUUAAAAACGUUCAG_AAAACAUAUUGUUGCCCGUGCCAU
(((((((.....((((((.....((.(((...............((....)).......((((((((..........))))))))....))).)).....))))))......))))))). (-19.90 = -20.13 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:15 2006