| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,132,783 – 17,132,888 |
| Length | 105 |
| Max. P | 0.548067 |
| Location | 17,132,783 – 17,132,888 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 88.08 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -14.66 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17132783 105 + 22407834 UUGACAUGACAGCAUUUUUUUUUGGAACAAAUUGCAUAAAAUGUGUUUGGUGUCUCAUUUAAAAGCACUAAACGUAAAUAUUAAAUUCGUCAUGGAUCUAAAUUA ....((((((.(((((((....((.((....)).)).)))))))((((((((.((........))))))))))...............))))))........... ( -22.60) >DroSec_CAF1 101276 102 + 1 UUGACAUGACAGCAUUU--UUUUGGAACAAAUUGCAUAAAAUGUGUUUGGUGUCUAAUUUAAAAGCACUAAACGUAAAUAUUAAAUUCGUCAUGCAUCCAA-UUG .((.((((((.((((((--(..((.((....)).)).)))))))((((((((.((........))))))))))...............)))))))).....-... ( -23.70) >DroEre_CAF1 98918 102 + 1 UUGACAUGACAGCAUUU--UUCUGGAACAAAUUGCACAAAAUUUGUUUGGUGUCUAAUUUAAAAGCACUAAACGUAAAUAUUGAAUUGGGUAUGGAUCCUG-UUG .......(((((.((((--.....(((((((((......))))))))).((..(((((((((.(..((.....))...).)))))))))..)))))).)))-)). ( -19.10) >DroYak_CAF1 101252 102 + 1 UUGACAUGACAGCAUUU--UUCUGGAACAAAUUGCAUAAAAUGAGUUUGGUGUUUAAUUCAAAAGCUCUAAAUGUAAAUAUUGAAUUGGUGAUGUAUCAUG-UUG ..(((((((..(((((.--..(..(..(((.((((((.....((((((..((.......)).))))))...))))))...)))..)..).))))).)))))-)). ( -21.90) >consensus UUGACAUGACAGCAUUU__UUCUGGAACAAAUUGCAUAAAAUGUGUUUGGUGUCUAAUUUAAAAGCACUAAACGUAAAUAUUAAAUUCGUCAUGGAUCCAA_UUG ....((((((.(((..................))).........(((((((((...........)))))))))...............))))))........... (-14.66 = -15.10 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:09 2006